Caulobacter sp. NIBR1757: AMEJIAPC_02778
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Entry
AMEJIAPC_02778 CDS
T10944
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
caub Caulobacter sp. NIBR1757
Pathway
caub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caub00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMEJIAPC_02778 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caub03019
]
AMEJIAPC_02778 (rhlE_2)
Enzymes [BR:
caub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AMEJIAPC_02778 (rhlE_2)
Messenger RNA biogenesis [BR:
caub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMEJIAPC_02778 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Utp25_C
Shikimate_DH
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
WGM39838
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All DBs
Position
2822603..2824027
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AA seq
474 aa
AA seq
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MTDFASLGLCKPILSALLAEGYTSPTPIQAQAIPLVLEGRDILGIAQTGTGKTAAFALPI
LQRLAETRKPAPRRGCRCLVLSPTRELATQIAESFRTYGKNMGLTVAVVFGGVKYGPQVR
ALAAGVDILVATPGRLIDHINEKVANLSETEVFVLDEADQMLDMGFVVPIRRIAKTLPQA
RQNLFFSATMPTEIGKLAGELLKNPAKVSVTPQATTVEKIDQKILFIEAGRKRALLAELM
DDGAMKRVLIFTRTKRGADRVAKQLGTIGVEAAAIHGDKSQGQRERSLASFKAGDVRALV
ATDIAARGIDVDGVSHVIQYELPNVPEAYVHRIGRTARAGANGSAISLVADDERNLLKDI
QKVTRQTIPSWDRRNDRNLGSAEAAFKAAQPPEAPRERDPRDTRGRSPAAKRNDHAAGKH
FANAPRAHRPGGYDPMVEGAVAAPAGNAAEKPKKRKRFRPGGGRGPNTTARAQA
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgatttcgcttccctgggcctttgcaagcccattctctcggcccttctggccgag
ggctacacctcccctaccccgatccaggcccaggcgatcccgcttgtgctcgaaggccgg
gacatcctgggcatcgcccagacgggcaccggcaagaccgccgccttcgccctgccgatc
ctgcaacgcctggccgagacccgtaagcccgcgccccgtcgcggctgccgctgcctggtg
ctgtcgcccacccgcgaactggccacccagatcgccgagagcttccgcacctacggcaag
aacatgggcctgaccgtcgccgtcgtcttcggcggcgtgaagtacgggccccaggtccgc
gccctggccgccggcgtcgacatcctggtcgccacccccggccggctgatcgaccacatc
aacgagaaggtcgccaacctgtcggagaccgaggtcttcgtgctcgacgaggctgaccag
atgctcgacatgggcttcgtggtgccgatccgtcgcatcgccaagaccctgccgcaggcc
cgccagaacctgttcttctcggccaccatgccgaccgagatcggcaagctggccggtgag
ctgctgaagaacccggccaaggtgtcggtgaccccgcaggccaccaccgtcgagaagatc
gaccagaagatcctgttcatcgaggcgggccgcaagcgcgccctgctggccgaactgatg
gacgacggcgccatgaagcgcgtgctgatcttcacccgcaccaagcgcggcgccgaccgc
gtggccaagcagctgggcaccatcggtgtcgaggccgccgccatccacggcgacaagagc
cagggtcaacgcgagcgcagcctggcctccttcaaggccggcgacgtccgcgccctggtg
gcgaccgacatcgccgcccgcggcatcgacgtcgatggcgtctcgcacgtcatccagtac
gagttgcccaacgtgccggaagcctatgtccatcggatcgggcgcaccgcccgggccggc
gccaatggttcggccatcagcctggtggccgacgacgagcgcaacctgctgaaggacatc
cagaaggtcacccgtcagaccatccccagctgggaccgtcgcaacgaccgcaacctgggt
tccgccgaagccgccttcaaggccgcccagccgccggaagccccgcgcgagcgtgatccg
cgcgacacccgcggccgcagcccggccgccaagcgcaacgaccacgcggccggcaagcac
ttcgccaacgccccgcgcgcccatcgtccgggcggctatgacccgatggtcgaaggcgcc
gtggcggctccggccggcaacgccgccgagaagccgaagaagcgcaagcgcttccgtccc
ggcggcggtcgtggcccgaacaccacggcccgtgctcaagcctag
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