Caulobacter sp. NIBR1757: AMEJIAPC_03545
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Entry
AMEJIAPC_03545 CDS
T10944
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
caub Caulobacter sp. NIBR1757
Pathway
caub03018
RNA degradation
Brite
Enzymes [BR:
caub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AMEJIAPC_03545 (deaD)
Messenger RNA biogenesis [BR:
caub03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMEJIAPC_03545 (deaD)
Ribosome biogenesis [BR:
caub03009
]
Prokaryotic type
rRNA helicases
AMEJIAPC_03545 (deaD)
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SSDB
Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WGM40600
LinkDB
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Position
3688973..3690826
Genome browser
AA seq
617 aa
AA seq
DB search
MTFPASHPALDAALLERGYETPTSVQSAVLEASDGQDLLVSAQTGSGKTVAFGIAMAESL
LGTEERFGRADAPLALIIAPTRELAIQVQRELTWLYGKTGAKIVSCVGGMDARAEARALN
FGAHIVVGTPGRLRDHLERGNLELTSLKVVVLDEADEMLDLGFREDLEFILETAPETRRT
LLFSATIAKDIALLARKFQNDALRIDTTSKDQPHVDIDYRAVRVAPNEVEHAVVNVLRYF
ESPGALVFCHTREAVRHLQASLKERGFAVVGLSGELSQRERSDALQALRDGHARVCVATD
VAARGLDLPDLGLVIHADLPQNKATLLHRSGRTGRAGRKGTSVLIVPYTRRRKAEMLFGS
ANIDAGWSGPPGAEEIRERDKARLLETAMTFEPVGEEDLALGKLLLEQKTPEEIAGAFMR
LQRGGLPEPEELYDDGRGADARPAKGAPRERSERSEAPRGGYDRPERVEYAPREPREGGM
TDGIWFRLNVGRGKNADPKWILPMICRLGHVTKKDVGSIKIFDSETKFEISAEASVRFAE
AVRATSREDVKIEPSTAPGIGDTRSPRPAGPAPRPAGPSGAGPGGPRKPYGEKKPYEKKP
PFKGPPPGKAGFKKHKP
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgaccttccccgccagccaccccgccctcgacgcggcgctcctcgagcgcggctatgaa
accccgacctccgtccagtccgccgtgctggaagcctccgacggccaggacctgctggtc
agcgcccagacgggctcgggcaagaccgtcgccttcggcatcgccatggccgagagcctg
ctggggaccgaagagcggttcggccgcgccgatgcgccgctggccctgatcatcgccccg
acccgcgaactggccatccaggtgcagcgcgagctgacctggctgtacggcaagaccggc
gccaagatcgtctcctgcgtcggcggcatggacgcccgggccgaggcccgcgccctgaac
ttcggcgcccatatcgtcgtcggcacccccggccgcctgcgcgaccacctggaacgcggc
aatctggaactgaccagcctgaaggtcgtcgtgctcgacgaggccgacgagatgctggac
ctgggcttccgcgaggacctggaattcatcctcgagacggcgccggaaacgcgccgcacc
ctgctgttctcggcgacgatcgccaaggacatcgccctgctggcccgcaagttccagaac
gacgccctgcgcatcgacaccaccagcaaggaccagccgcacgtcgacatcgactaccgc
gccgtccgcgtggcgccgaacgaggtggagcatgccgtcgtcaacgtgctgcgctacttc
gaatcccccggcgccctggtcttctgtcacacccgtgaagccgtgcggcacctgcaggcg
tccctgaaggaacgcggctttgccgtcgtcggcctgtccggtgaactgagtcagcgcgaa
cgctccgatgcgctgcaggccctgcgtgacggtcacgcccgcgtctgtgtcgccaccgac
gtcgccgcgcgcggcctcgacttgcccgacctcggcctcgtcatccacgccgacctgccg
cagaacaaggccaccctgctgcaccgttcgggccggaccggccgcgcgggccgcaagggc
accagcgttctgatcgtgccctacacccgtcgccgcaaggcggagatgctgttcggctcg
gccaacatcgacgccggctggagcggcccgcccggggccgaggaaatccgcgagcgcgac
aaggcccgcctgctggaaacggcgatgaccttcgagcccgtgggcgaggaagacctggcg
ctgggcaagctgctcttggaacagaagacaccggaagagatcgccggggccttcatgcgc
ctgcaacgcggcggcctgcccgagccggaagaactgtacgacgacggccgcggcgccgat
gcgcgccccgccaagggtgcgccgcgcgagcggtcggaacgctccgaggccccgcgtggc
ggctacgaccgtcccgagcgcgtcgagtacgcgccgcgtgagccgcgcgaaggcggcatg
accgacggcatctggttccgcctgaacgtcggccgcggcaagaacgccgacccgaagtgg
atcctgccgatgatctgccgcctgggtcacgtgaccaagaaggacgtcggctcgatcaag
atcttcgacagcgagacgaagttcgagatcagcgccgaagcttcggtgcggtttgccgaa
gcggtgcgggcgacgtcgcgggaagacgtgaagatcgagccgtcgacggcgccgggcatc
ggcgatacccgctcgccgcgcccggccggtccggctccgcgtccggcagggccgtcgggc
gccggaccgggtggtccgcgcaagccgtatggtgagaagaagccgtacgagaagaaaccg
ccgttcaagggtccgcctcccggcaaggcggggttcaagaagcataagccgtag
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