Caulobacter sp. ErkDOM-YI: ACN2C6_01645
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Entry
ACN2C6_01645 CDS
T11755
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
caue Caulobacter sp. ErkDOM-YI
Pathway
caue03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
caue00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACN2C6_01645 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caue03021
]
ACN2C6_01645 (rpoB)
03400 DNA repair and recombination proteins [BR:
caue03400
]
ACN2C6_01645 (rpoB)
Enzymes [BR:
caue01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACN2C6_01645 (rpoB)
Transcription machinery [BR:
caue03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACN2C6_01645 (rpoB)
DNA repair and recombination proteins [BR:
caue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACN2C6_01645 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
XPR13296
LinkDB
All DBs
Position
333319..337401
Genome browser
AA seq
1360 aa
AA seq
DB search
MAQSFTGKKRIRKSFGRIPEAVQMPNLIEVQRSSYEQFLQREVRPGMRKEEGIEAVFRSV
FPIKDFNERAVLEYVSYEFEEPKYDVEECIQRDMTFAAPLKVKLRLIVFETEEETGARSV
KDIKEQDVYMGDIPLMTDKGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHASGKLLFAA
RVIPYRGSWLDFEFDAKDVVYVRIDRRRKLPATTFLYALGMDGEEILTTFYDVVPFEKRT
TAGAEGWATPYKPERWRGVKPEFALIDADTGEEVAPAGTKITARQAKKLADAGLKTLLLA
PEALTGRYLARDAVNYENGEIYAEAGDELDVVSIQALADQGFSTIDVLDIDHVTVGAYMR
NTLRVDKNAVREDALFDIYRVMRPGEPPTVEAAEAMFKSLFFDAERYDLSAVGRVKMNMR
LELDASDEMRVLRKEDVLAVLKLLVGLRDGRGEIDDIDNLGNRRVRSVGELLENQYRVGL
LRMERAIKERMSSVDIDTVMPHDLINAKPAAASVREFFGSSQLSQFMDQTNPLSEITHKR
RLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARVNKYGFIE
SPYRRVADGKPLDEVVYMSAMEESKHVIAQSNIKVLNGEIVDDLVPGRINGEPTLLQKEM
VDLMDVSPRQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLVQSDAPLVGTGMEAVVA
RDSGAVVVAKRTGVVEQIDGTRIVVRATEETDAARSGVDIYRLSKFQRSNQSTCINQRPL
VKVGDKINSGDIIADGPSTELGELALGRNALVAFMPWNGYNFEDSILISERIVRDDVFTS
IHIEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVQPGDILVGKVTPK
GESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGVDKDERALAIER
SEIDRLGKDRDDEFAILNRNISGRLRELLIGNVALSGPKGLSRGEITAQGLADVQPGLWW
QIALEDEKAMGELESLRRLFDENRKRLDRRFEDKVDKLQRGDELPPGVMKMVKVFVAVKR
KLQPGDKMAGRHGNKGVISRILPIEDMPFLADGTHVDVVLNPLGVPSRMNVGQIFETHLG
WACAGLGKQITALLEDWQAGGQKEALIERLTDIYGPDEELPDTEEGLIELARNLGKGVPI
ATPVFDGARIGDIEDHLRMAGLDPSGQSILFDGQTGDQFKRPVTVGYIYMLKLHHLVDDK
IHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRT
KVYESIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELENS
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaatcctttaccggcaagaagcggatccggaagtctttcggccgcatccccgaa
gctgtgcagatgccgaacctgatcgaggttcagcgctcctcctacgaacagttcctgcag
cgcgaagtccgtccgggcatgcgcaaggaagagggcatcgaggcggtcttcaggtccgtc
ttcccgatcaaggatttcaacgagcgcgcggtgctcgaatacgtctcgtacgaattcgaa
gagcccaagtacgacgttgaagaatgcatccagcgcgacatgaccttcgcggcgccgctg
aaggtcaagctgcgcctgatcgtgttcgaaaccgaagaagaaaccggcgcccggtccgtc
aaggacatcaaggagcaggacgtctacatgggcgatattccgctcatgaccgacaagggc
acctttatcgtcaacggcaccgagcgggtcatcgtctcgcagatgcaccgctcccctggc
gtgttcttcgaccacgacaagggcaagacccacgcctcgggcaagctgctgttcgccgcc
cgcgtcattccctatcgcggctcgtggctggacttcgagttcgacgccaaggacgtggtc
tatgtccgcatcgaccgtcgccgcaagctgcccgccaccaccttcctctatgccctgggc
atggacggcgaagagatcctgaccacgttctacgacgtggtgcccttcgagaagcgcacc
acggccggcgccgaaggctgggccaccccctacaagcccgagcgctggcgcggcgtgaag
ccggaattcgccctgatcgacgccgacaccggcgaagaagtggccccggccggcaccaag
atcaccgcccgtcaggccaagaagctggctgacgccggtctcaagaccctgctgctggcg
cccgaggccctgaccggccgttacctggcccgcgacgccgtcaactacgagaacggcgag
atctacgccgaagccggcgacgagctggacgtggtctcgatccaggccctggccgatcaa
ggcttcagcaccatcgacgtgctggacatcgaccacgtcacggtcggcgcctacatgcgc
aacaccctgcgcgtggacaagaacgccgtccgcgaagacgccctgttcgacatctatcgc
gtcatgcgtccgggcgagccgcccaccgtcgaagccgctgaagcgatgttcaagtcgctg
ttcttcgacgccgagcgctacgacctgtcggccgttggccgcgtgaagatgaacatgcgc
ctggagctggacgcttcggacgagatgcgcgtgctccgcaaggaagatgtgctggccgtt
ctgaagctgctggtcggtctgcgcgatggtcgcggcgaaatcgacgacattgacaacctc
ggcaaccgccgggtgcgctcggtcggcgagctgctggaaaaccagtaccgcgtcggcctg
ctgcgcatggaacgcgccatcaaggaacgcatgtcgtccgtcgacatcgacaccgtgatg
ccgcacgacctgatcaacgccaagccggccgcggcctcggtgcgtgaattcttcggctcc
tcgcagctgtcgcagttcatggaccagaccaacccgctgtcggagatcacccacaagcgt
cgtctctcggcgcttggcccgggcggtctgacccgcgagcgcgccggcttcgaagtccgc
gacgttcacccgacccactacggccgcatctgcccgattgaaacgccggaaggcccgaac
atcggtctgatcaactcgctggccacccacgcccgcgtcaacaagtacggcttcatcgag
agcccttaccgtcgcgtcgccgacggcaagccgctcgacgaggtcgtctacatgtcggcc
atggaagagtcgaagcacgtcatcgcccagtccaacatcaaggtgttgaacggcgagatc
gtcgacgacctggtccccggccggatcaacggcgaacccacgctcctgcaaaaggagatg
gtcgaccttatggacgtgtcgccgcgtcaggtggtttcggtggccgcggccctgatcccc
ttcctcgaaaacgatgacgccaaccgcgccctcatgggctcgaacatgcaacgtcaggcc
gtgcccctcgtgcaatccgatgccccccttgtcgggacaggcatggaagccgtggtcgct
cgcgactccggcgccgtggtcgtggccaagcgcaccggcgtggtcgagcagatcgacggt
acccgtatcgtcgtccgcgccaccgaagaaaccgacgccgcccgttcgggcgtcgacatc
tatcgcctcagcaagttccagcgctcgaaccagtcgacctgcatcaaccagcgtccgctg
gtgaaggtgggcgacaagatcaactccggcgacatcatcgccgacggtccttcgaccgag
ctgggcgaactggccctgggccgcaacgcgctcgtcgcgttcatgccctggaacggctac
aacttcgaagactcgatcctgatctccgaacgcatcgtccgcgacgacgtcttcacctcg
atccacatcgaggaattcgaagtcatggcccgcgacaccaagctcggcccagaagaaatc
acccgcgacatccccaacgtcggcgaggaggccctgcgcaacctcgacgaagcgggcatc
gtggccatcggcgccgaagtccagccgggcgacatcctggtcggcaaggtcaccccgaag
ggcgaaagcccgatgacgccggaagaaaagctcctgcgcgccatcttcggtgaaaaggcc
tcggacgtccgcgacaccagcctgcgcctgcccccgggcgtcgccggcaccatcgtcgac
gtgcgcgtgttcaaccgtcacggcgtcgacaaggacgaacgcgccctggccatcgaacgc
tcggaaatcgaccgcctgggcaaggaccgcgacgacgaattcgcgatcctgaaccgcaac
atctcgggccgtctgcgcgaactgctgatcggcaacgtcgctctgtcgggccccaagggc
ctgtcgcgcggcgagatcaccgctcaaggcctggctgacgttcagcccggcctgtggtgg
cagatcgcgctcgaagacgagaaggcgatgggcgaactcgagtcgctgcgccgtctgttc
gacgagaaccgcaagcgtctggaccgtcgtttcgaagacaaggtcgacaagctgcagcgc
ggcgacgaactgcccccgggcgtgatgaagatggtcaaggtcttcgtggccgtgaagcgc
aagcttcagcccggcgacaagatggccggtcgtcacggcaacaagggcgtcatctcgcgc
atcctgccgatcgaggacatgccgttcctcgccgacgggacgcacgtcgacgtcgttctg
aacccgctgggcgtgccttcgcgcatgaacgtcggccagatctttgaaacccacctgggt
tgggcctgcgccggtctcggcaagcagatcaccgccctgctggaagactggcaggccggc
ggtcagaaggaagcgctgatcgagcgtctgaccgacatctacggcccggacgaagagctg
cccgacaccgaagaaggtctgatcgagctggctcgcaacctcggcaagggcgttccgatc
gcgacgcccgtgttcgacggcgcgcgcatcggtgacatcgaagaccacctgcgcatggcg
ggtctcgacccctcgggccagtcgatcctgttcgacggtcagacgggcgaccagttcaag
cgtccggtcacggtcggctacatctacatgctgaagctgcaccacctggtcgacgacaag
atccacgcccgttcgatcggtccgtactccctcgtcacgcaacagccgctgggtggtaag
gcccagttcggcggtcagcgcttcggggaaatggaagtctgggcacttgaagcctatggc
gccgcctacaccttgcaggaaatgctgacggtgaagtccgacgacgtggccggccggacc
aaggtctacgagtcgatcgtccgtggcgatgacacgttcgaagccggtatccccgaaagc
ttcaacgtgctggtcaaggaaatgcgctcgctcggcctgaacgtcgagctggagaacagc
tga
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integrated database retrieval system
