Caulobacter sp. FWC26: CSW63_06195
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Entry
CSW63_06195 CDS
T05901
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cauf
Caulobacter sp. FWC26
Pathway
cauf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cauf00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CSW63_06195 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cauf03021
]
CSW63_06195 (rpoD)
Transcription machinery [BR:
cauf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CSW63_06195 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Com_YlbF
TniQ
Motif
Other DBs
NCBI-ProteinID:
AZS20267
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All DBs
Position
992560..994518
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AA seq
652 aa
AA seq
DB search
MSNNSSAETEAPETTGGDGPLLDLTDAGVKKFIKQAKARGYVTMDELNKVLPSEEVSPDA
IEDTLAMLSEMGVNVVEAEEDAENAEGGEVATRDENTAVIASDKPAAYDRTDDPVRMYLR
EMGSVELLSREGEIAIAKRIEAGRDTMIRGLCESALTFEAIMVWREELGTGRILLREVID
LEATYAAINGVAAAPAAEDDDGPAEPVDDEAGEAKAEGAEGEDEDDFDDGAGPTVSAMEG
ELREGVMAILDAIASEFESFRKLQDKLVGSRLKGEDLSEADRKAYESLSATIIQHLKTLK
LNNNRIEALVEQLYAINKRLIGLEGRLLRLADSYGISRAEFLKAYFGAELNPTWTEQVKA
MGVRWTKFVENDSQSVQDIRQEIAALATETGVPIDDYRRIVQTVQKGEREARQAKKEMVE
ANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITR
SIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIA
KEPISLETPIGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRVLASLTPREERVLRM
RFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacaattcctcggccgagacggaagcgcccgaaaccaccggtggtgacggcccc
ctgctcgatctgaccgacgctggcgtcaagaagttcatcaagcaggcgaaagcccgcggc
tacgtcacgatggacgagctgaacaaggtgctgccgtccgaggaagtgagcccagacgcc
atcgaagacacgctggccatgctcagcgagatgggcgtcaacgtggtcgaggccgaggag
gacgccgaaaacgccgagggcggcgaagtcgccacgcgcgacgagaacacggccgtcatc
gccagcgacaagcccgcagcctacgaccgcaccgacgacccggtacgcatgtacctgcgc
gaaatgggctcggtggagctgttgtcgcgcgagggcgaaatcgccatcgccaagcgtatc
gaggccggccgcgacacgatgatccggggcctgtgcgagtcggccctgaccttcgaagcc
atcatggtgtggcgcgaggaactgggcacaggccgcattctgctgcgcgaagtgatcgac
ctggaagccacctacgccgcgatcaacggcgtggccgccgcgccggccgccgaggatgac
gatggtcctgccgagccggtcgacgatgaagccggcgaggccaaggccgagggcgccgag
ggcgaggacgaagacgatttcgacgacggcgccggtcccacggtcagcgccatggaaggc
gaactgcgcgaaggcgtgatggccattctggacgccatcgccagcgagttcgagagcttc
cgcaagctgcaggacaagctggtcggtagccgcctgaagggcgaagacctctcggaagcc
gaccgcaaggcctatgaaagcctctcggcgaccatcatccagcacttgaagacgctgaag
ctgaacaacaaccgcattgaggctctcgtcgagcagctctatgcgatcaacaagcgcctg
atcggcctggaaggccgcctgctgcgcctggccgacagctacggcatcagccgcgccgag
ttcctgaaggcctatttcggcgccgagctgaacccgacctggaccgagcaggtcaaggcg
atgggcgtgcgctggaccaagttcgtcgagaacgacagccagtcggtgcaggacatccgc
caggaaatcgccgctctcgccaccgagaccggcgtgccgatcgacgactaccgccgtatc
gtccagaccgtccagaagggcgagcgcgaagcccgtcaggccaagaaggagatggtcgag
gccaacctgcgcctcgtgatctcgatcgccaagaagtacaccaaccgcggcctgcagttc
ctggacctgatccaggagggcaacatcggcctgatgaaggcggtcgacaagttcgagtac
cgtcgtggctacaagttctcgacctacgccacctggtggatccgtcaggcgatcacccgc
tcgatcgccgaccaggcccgcacgatccgtatcccggtgcacatgatcgagacgatcaac
aagatcgtccgcaccagccgacagatgctgcacgagatcggccgcgaaccgacccccgaa
gagctggccgaaaagctggccatgccgctggaaaaggtccgcaaggtcctgaagatcgcc
aaggagccgatcagcctcgaaaccccgatcggcgacgaggaagacagccacctgggcgac
ttcatcgaggacaagaacgccgtcctgccgatcgacgcggccatccagtccaacctgcgc
gaaaccaccacccgcgtgctggcctcgctgaccccgcgtgaagagcgcgtgctgcggatg
cgcttcggcatcggcatgaacaccgaccacacgctggaagaagtcggtcagcagttctcg
gtgacccgcgaacgcatccgtcagatcgaggccaaggccctgcgcaagctcaagcacccg
tcgcggtcgcgcaagctgcgcagcttcctggacagctaa
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