Caulobacter sp. FWC26: CSW63_08485
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Entry
CSW63_08485 CDS
T05901
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cauf
Caulobacter sp. FWC26
Pathway
cauf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cauf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSW63_08485 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cauf03019
]
CSW63_08485 (rnr)
03016 Transfer RNA biogenesis [BR:
cauf03016
]
CSW63_08485 (rnr)
Enzymes [BR:
cauf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CSW63_08485 (rnr)
Messenger RNA biogenesis [BR:
cauf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CSW63_08485 (rnr)
Transfer RNA biogenesis [BR:
cauf03016
]
Prokaryotic type
tRNA degradation factors
CSW63_08485 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
AZS20681
LinkDB
All DBs
Position
complement(1484250..1486532)
Genome browser
AA seq
760 aa
AA seq
DB search
MAKLRPTKTFKPKPPAGLPDRETLLAFLRDAGETGKADIARHFGLKGADRRALREMIREL
EAQGALAKRGRKGFAEAGSLPPVGVADVVERDGDGELYVKLTKSDDDVPNVRLAPGKGEA
AAGAPGLGDRLLVRFERLETGEFEAKLIKKLGQSAHKILGVIRKHRREVRVEPVDRKSKE
SLVLDPSVAHEYKDGDLVLAQVGTHGGRYGPKPGKVLEVVGTENDPRAASLIAIHSHGIP
TGFSEAAEAEAKTAVEPTLAGREDLRDLPFVTIDPVDARDHDDAVYAHPDDDETNKGGFV
VWVAIADVAAYVRPGSALDRDAREKGNSVYFPDRVEPMLPETLSNGLCSLRESENRATLA
VRMVFDKSGRKKGHRFVRGLMRSAAKLSYEQAQAAIDGQPDDKAGPLLEPILKPLWDAYR
TMKIGRDARSPLAIESDERRIIIKGGEITSITKRASLEAHKLIEEMMVQANVCAAESLEA
KRSPLIYRVHDTPSLEKVQNLADFLQTLEIRWSKGEAPQTSRFNKLLDETRESPNAAIIN
EVVLRTQMQAHYSADNIGHFGLNLAKYAHFTSPIRRYADLIVHRGLIRALGLGTDGLTDQ
DIAQIKDTAEVITHAERRAMAAERDATDRYIAAFLADRVGATFEGRITGVTRFGLFIKLA
DTGADGLVPVSSLGQEFFVHDDKMHALVGERTGKRWPLGMGVEVKLVEATPVTGGLLFEM
LSDPLPPDPKMPRPRLGARRQAAVKPRGGLPKGVRRGKRR
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggctaaacttcgcccgacaaagactttcaagcccaagccgccggctggcctgcccgac
cgcgagacgctgctggcgttcctgcgcgacgcgggcgagaccggcaaggccgacatcgcc
cggcacttcggcctcaagggcgccgaccgccgggccttgcgtgagatgatccgcgagctg
gaagcccaaggcgcgctggccaagcgcggccgcaagggcttcgccgaagccggctccttg
ccgcccgtcggtgtggccgatgtggtcgagcgcgacggcgacggcgagctctatgtgaag
ctgaccaagtccgacgacgacgtgcccaatgtccgcctcgcgcccggcaagggcgaggcc
gccgccggcgcgccgggcctcggcgaccgcctactcgtccgtttcgagcggctggagacc
ggcgaattcgaggccaagctgatcaagaagctgggccaaagcgcccacaagatcctgggc
gtcatccgcaaacaccgccgcgaagtccgcgtcgagccggtggatcgcaagtccaaggaa
agcctggttctcgatcccagcgtggcccacgaatacaaggacggcgaccttgtcctggcc
caggtgggcacgcacggcggccgctatggtcccaagcccggcaaggtgctggaggtggtc
ggcaccgagaacgacccgcgcgcggcctcgctgatcgccatccacagccacggcatcccg
accggcttctccgaagccgccgaagccgaggccaagaccgccgtcgagccgaccctggcg
ggccgcgaagacctgcgcgatctgccgttcgtgaccatcgacccggtggacgcccgcgac
cacgacgacgccgtctacgcccatcccgacgacgacgagaccaacaagggcggctttgtc
gtctgggtcgccatcgccgatgtcgcggcttacgtccggcccggctcggccttggatcgc
gacgcccgcgagaaaggcaacagcgtctacttccctgatcgcgtcgagccgatgctgccc
gagaccctctcgaacggcctgtgctcactgcgcgagagcgagaaccgcgctacgctggcc
gtccggatggtgttcgacaagtcgggccgcaagaagggccacaggttcgtgcgcggcctg
atgcgctcggccgccaagctctcgtacgagcaagcccaggccgcgatcgacggccaaccg
gacgacaaggccggtccgctgctagaaccgatcctcaagcccctgtgggacgcctaccgg
acgatgaagatcggccgcgacgcccgctcgccgctggccatcgagagcgacgagcgccgg
atcatcatcaagggcggcgagatcacctcgatcaccaaacgcgcctcccttgaggcccac
aagctgatcgaggagatgatggtgcaggccaatgtctgcgccgccgaaagccttgaggcc
aagcgttcgcccctgatctaccgggtccacgatacgcccagtctggagaaggtgcagaac
ctcgccgacttcctgcagactctggaaatccgctggagcaagggcgaggcgccgcagacc
tcgcggttcaacaagctcttggacgaaacccgcgagagcccgaacgcggcgatcatcaac
gaggtggtcctgcgcacccagatgcaggcccactacagcgccgacaacatcggtcacttc
ggcctgaacctggccaagtacgcccacttcaccagcccgatccgccgctatgccgacctg
atcgtgcaccggggtctgatccgagccctgggcctcgggaccgatggcctgaccgaccag
gacatcgcccagatcaaggacaccgccgaggtcatcacccacgccgagcgtcgggcgatg
gccgccgagcgcgacgccacagaccgctacatcgccgccttcttggccgaccgggtgggc
gcgaccttcgagggccggatcaccggcgtcacccgcttcggcctgttcatcaagctggcc
gacaccggcgccgacggcctcgtgccggtctcgagcctcggccaggagttcttcgtccac
gacgacaagatgcacgccctggtcggcgaacggaccggcaagcgctggccgctgggcatg
ggtgtcgaggtcaagctggtcgaggccacgcctgtcacgggcggtctgctgttcgaaatg
ctcagcgacccgctgccgcccgaccccaagatgcctcggcctcggcttggggcgcgtcgc
caggcggcggtgaagccacgcggcggcctgcccaagggcgtgcggcgcgggaagcggcgg
tag
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