Clostridium felsineum DSM 793: CLAUR_009920
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Entry
CLAUR_009920 CDS
T08241
Symbol
recJ_2
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
caun
Clostridium felsineum DSM 793
Pathway
caun03410
Base excision repair
caun03430
Mismatch repair
caun03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
caun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CLAUR_009920 (recJ_2)
03430 Mismatch repair
CLAUR_009920 (recJ_2)
03440 Homologous recombination
CLAUR_009920 (recJ_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caun03400
]
CLAUR_009920 (recJ_2)
DNA repair and recombination proteins [BR:
caun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CLAUR_009920 (recJ_2)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CLAUR_009920 (recJ_2)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLAUR_009920 (recJ_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
HA70_C
Motif
Other DBs
NCBI-ProteinID:
URZ01004
LinkDB
All DBs
Position
complement(1088363..1090126)
Genome browser
AA seq
587 aa
AA seq
DB search
MEKWFIKNIRADYKAISKSFGINEVIGKLLVNRGIIDNTLIKSFLNPKFEKMHDSKKMKD
AEKASLILKDKIEKKRKIRIIGDYDVDGVISTYLLFTALKRCGADVDYDIPDRVKDGYGI
NKNIIDKCIMDSVNTIITCDNGISAIEPINYAKEANITVIVTDHHDIPFVENEKGERTFV
SSNADAIVNPKQIECAYPFKSLCGAGVVFKLIEILYAEFKIHKEECYNLSQFVAIATVCD
VVDLVDENRIFVKNGLELLNNTRNIGLRALIRQTAIDDKKISTYHLGFVIGPCINATGRL
DTAKRGLQLLVTENENEAVRLSKELFDFNNERKEMTQKGVESAINIIENTNMTKDKVFVV
YVPEVHESIVGIVAGRIREKYNVPTIVLTKTENGAKGSGRSIEGYNMFEELMKCKDILLN
FGGHPMAAGLSLEENNINNLREQLNFNTKLTDEDLIPKITLDMGMPLEHISYDFVKDLSI
LEPFGKANPKPIFGEKKANIVSAKVIGQNHNVLKIKFFSKNRRYIDGIFFGDIEEFQRLV
IDRYGTVELNKMYSGIENNVNLDIAFYPDINEYNGNVSVQIVVQYFR
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaaatggtttataaaaaacataagagcagactataaagcaatttctaaaagtttt
ggaataaatgaagtaataggaaagcttcttgttaataggggaattatagataatacatta
ataaaaagttttttgaatcctaagtttgaaaaaatgcatgattcaaaaaaaatgaaggat
gctgaaaaagctagcttaattttaaaggataaaatagagaaaaaaagaaaaataagaatt
ataggagattatgatgtagatggagttataagtacatatttactttttacagctttaaaa
agatgtggtgcagatgttgattacgatataccagatagagtcaaggatggttatggaata
aataaaaatataatagataaatgtataatggattcggtcaatactataataacttgtgat
aacggaatttcagcaatagaaccaataaattatgcaaaggaagctaatattacagttata
gttactgatcatcatgatataccttttgtagaaaatgaaaagggtgaaagaacctttgta
agttcaaatgcagatgctatagtaaatcctaaacaaattgaatgtgcatatccatttaaa
agcctatgtggggcgggggttgtttttaaacttatagaaattttgtatgctgaatttaaa
atacataaagaagagtgttataatttatcccaatttgtagcaattgctacagtatgtgat
gttgttgatttagtagatgaaaatagaatttttgttaaaaatggattagaactacttaat
aatactagaaatataggcctgagagcacttataagacaaacagccatagatgataaaaag
atctctacatatcatcttggattcgtgataggtccatgtataaatgctacaggtagactt
gatacagctaaaagaggtcttcaattattagtaactgaaaatgaaaatgaggcggtaagg
ctttcaaaagaattatttgattttaacaatgagagaaaagaaatgacacaaaagggtgta
gaaagtgctataaatataattgaaaacacaaacatgacaaaagataaagtttttgtagtt
tatgtacctgaagtccatgaaagtatagttggaatagttgctggtaggataagagaaaaa
tataatgtaccaactatagtgcttacaaaaactgagaatggtgcaaagggatcaggaaga
tctatagagggatataatatgtttgaagaattaatgaaatgtaaggacatattattaaat
tttggaggacatcctatggctgccggactatcccttgaagaaaataacataaataattta
agagaacagttaaactttaatactaaattgactgatgaggacttaatacctaaaataaca
cttgatatgggaatgccacttgaacatataagttacgattttgttaaggatttaagtata
ctagaaccttttggaaaagctaatcccaaacctatttttggagaaaaaaaagcaaatata
gttagtgcaaaagtaataggacaaaatcataatgtcttaaaaataaaatttttttctaaa
aacagaagatatatagatggaatattttttggagatatagaggagtttcaaagattagta
atagataggtatggtactgtagaattaaataaaatgtatagtggtattgaaaataatgtt
aatttggatatagcattttatccagatataaatgaatataatggaaatgtaagtgttcaa
atagtagtacaatattttaggtga
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