Clostridium felsineum DSM 793: CLAUR_016670
Help
Entry
CLAUR_016670 CDS
T08241
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
caun
Clostridium felsineum DSM 793
Brite
KEGG Orthology (KO) [BR:
caun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
caun03016
]
CLAUR_016670
Enzymes [BR:
caun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CLAUR_016670
Transfer RNA biogenesis [BR:
caun03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CLAUR_016670
Prokaryotic type
tRNA splicing ligases
CLAUR_016670
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
WCX
DUF3920
AAA_31
Motif
Other DBs
NCBI-ProteinID:
URZ01672
LinkDB
All DBs
Position
complement(1870546..1872801)
Genome browser
AA seq
751 aa
AA seq
DB search
MELFDERKNRYMHIVFKVLNECKKGILKQDIIKIIDEEEFEEKVIGNDQRSFEGLLLNKY
SNSENFNLLKEKNGVYYPNIKIDKAIPVRFTNLEKAWLKNMLEHKDIKNILRSSTIEKLK
NAICDVDAPIINEIVHITNQSKAYSVKSTEEFKENFMKLLKAISEEKSVRYTGRDKYGNR
YFDKSAFPIRLEYSLRDERFRVSMYSIDENRFIMSNIFSMSDIKIDENSSSNIKREDILK
KLQSQKYSKEPIIMEVIDKKFAMERCFMSFSELERYSRCISKDKYELKLFYYPFEEEEII
RKILALGPYVKILEPEKIKNEIIRRIRVALDINGFNVCRKDDNKMIEIKGKYNTAKVYTS
KLEPEVVAQIVELCNQDFCKDSKIVIMPDTHAGKGCVIGFTADLGDKVIPNIVGVDIGCG
MTTIELGKINIDLEKLDEIIRKYVPSGMSVHEGRSVKFNELKELYCYRDLKNTKRIEKSI
GTLGGGNHFIELNKDDEDNIYLVIHSGSRNLGKQVAEIYQNIAIDLCSGKEDYFEKKDKL
IEEYKRQGKRKLIEAKLKELKKEYDYMKPSYPKELCFLTGKYREKYLNDMNICQEYAALN
RETMADIILKKLMGKSLKEFSYFNTVHNYINFKDNIIRKGSISAYKDEKLLIPINMRDGS
ILAFGKGNADWNYSAPHGAGRLMSRNRAKAELSLEEFKKSMEGIYTTSINYSTLDEAPMA
YKPIEEIIENIKDSVEVYKILKPIYNFKASN
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atggagctctttgatgaaagaaaaaacagatacatgcatattgtatttaaagtacttaat
gagtgtaaaaaaggaatattgaagcaagatataattaaaataattgatgaagaagaattt
gaagaaaaagttataggaaatgatcaaagaagttttgaagggcttctccttaataaatat
tctaatagtgagaattttaatctgcttaaagaaaaaaacggtgtttattatcccaatata
aaaatagataaagctatacctgttagatttacaaatttagaaaaggcgtggcttaaaaat
atgctagagcataaagatataaaaaatattttaagaagttctacaatagaaaagcttaaa
aatgctatttgtgatgttgatgcacctataataaatgaaattgtccatataactaaccaa
tctaaggcatatagtgttaaaagcactgaagaatttaaagaaaatttcatgaagctttta
aaggcgatttcagaagaaaaaagtgtaagatacacaggtagagataaatatggtaataga
tattttgataaaagtgcttttcctataagactagagtattcacttagggatgaaaggttc
agagtttcaatgtattctatagatgaaaatagatttataatgtctaatatttttagtatg
agtgatattaaaatagatgaaaatagcagttctaatataaaaagagaagatattttaaag
aaattacaatctcaaaaatattctaaagaacctattattatggaagttattgataaaaaa
tttgctatggaaagatgtttcatgagcttttcagaattggagaggtattcaaggtgcatt
tcaaaggataaatatgaattgaaacttttttattacccttttgaagaggaagaaataata
agaaaaatattagctttaggtccgtatgttaagatactagaacctgaaaaaataaaaaat
gaaataataaggagaataagggttgctctcgatataaatggatttaatgtttgtagaaag
gatgataataagatgatagaaataaagggaaaatataatacagctaaagtttatacaagt
aaattagagccagaagtagtggcacagatcgttgaactatgtaatcaagacttttgtaag
gatagtaaaattgtgataatgccagatactcatgcaggtaaaggctgcgttataggtttt
actgctgatttaggtgataaggttattcctaacatagtaggagtggatataggctgtgga
atgacaacaattgagcttggaaaaattaatatagatttggaaaagctagacgagattatt
agaaaatatgtaccttcaggaatgtcagtacatgaggggagaagtgttaagtttaatgaa
cttaaagaattatactgttatagggatttaaagaatacaaaaagaattgaaaaaagtatt
ggtactttaggcggaggaaatcactttattgaacttaataaggatgatgaagataatata
tatcttgtaattcattcaggaagtagaaatttaggtaagcaagttgcagagatatatcaa
aatattgccattgatttatgttctggtaaagaagattatttcgagaaaaaagataagctt
atagaagaatacaaaagacaagggaaaagaaaacttatagaagctaaattaaaagaacta
aaaaaagagtatgattatatgaagccatcatacccaaaagagttatgttttttgacagga
aaatatagagaaaaatatttaaatgatatgaatatatgtcaagaatacgctgcattaaat
agagaaactatggcagatataatattaaaaaagttaatgggaaaaagtcttaaagagttt
agttattttaatacagtgcataattatataaatttcaaggacaacataataagaaaagga
agtatttcagcatataaggatgaaaaacttttaattcctataaatatgagagatggaagt
atattagcttttggaaagggtaacgctgattggaattactctgcgccacatggtgctggc
agacttatgagtagaaatagggcaaaagcagaattaagtttagaggaatttaaaaaatca
atggaaggaatttatactacatcgattaattattctacattggatgaagcacctatggca
tataaaccaatagaagaaattatagaaaatattaaagattcagtagaagtatataaaatt
ttaaaacctatttataactttaaagctagcaattag
DBGET
integrated database retrieval system
