Clostridium felsineum DSM 793: CLAUR_017050
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Entry
CLAUR_017050 CDS
T08241
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
caun
Clostridium felsineum DSM 793
Pathway
caun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLAUR_017050 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caun03019
]
CLAUR_017050 (rnr)
03016 Transfer RNA biogenesis [BR:
caun03016
]
CLAUR_017050 (rnr)
Enzymes [BR:
caun01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CLAUR_017050 (rnr)
Messenger RNA biogenesis [BR:
caun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CLAUR_017050 (rnr)
Transfer RNA biogenesis [BR:
caun03016
]
Prokaryotic type
tRNA degradation factors
CLAUR_017050 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_Dis3
S1CSD-TOTE-2
CSD
S1_RRP5
OB_HELZ2
WHD_MCM
Motif
Other DBs
NCBI-ProteinID:
URZ01710
LinkDB
All DBs
Position
complement(1918362..1920506)
Genome browser
AA seq
714 aa
AA seq
DB search
MNIRESILEFMREQAYKPMNIKELSEVFTIEKADYKIFKELLKNMEKEGLIIKNRTDHFG
LPEKMGLIKGTLQGNAKGFGFVIPEEDRPDIYVPSVYMNGALNGDKVVAKILKESDNGKK
CEGEIIRILERANKTVVGIYENSKNFGFVVADDARIAQDIFIPKSDKNGAKTGDVVIAEI
TVWPKKRRNPEGKIVEIIGSKGDKGVDILTIIKKHKLPEKFPEKVERFAEGIPDEIPESE
YKRRRDLRNIKMVTIDGEDAKDLDDAVSIEKMPNGNFKLGVHIADVSNYVRENNPLDKEA
LKRATSVYLIDRVIPMLPKKLSNGICSLNPKQDRLAMSCFMEIDNTGKVIQHDIFESVIK
TNERMTYTDVTKILRDHDEETIKAYEYLYEDFKNMEELASILNKKRLSRGAIDFDFEESK
ITLNELGKPVEIKPYERAIANRIIEEFMLVCNETIAEHFYWANIPFVYRVHEEPDNEKLE
RFNEFIHNLGYAVRWGAEVHPKQLQDVIEKIKGKKEETVVSTLLLRSLKQARYSPECSGH
FGLAARYYCHFTSPIRRYPDLIIHRVMKEYINGRMDENRSKKLIGTVDYASIQSSEMERV
AQEAEREVDSLKKAEYMADRVGEEFDGIISSVTNFGIFVQLPNTIEGLVHISELTDDYYI
YDEKYLSLVGERTKKIYKLGDEARIKVDKVNVDSHEIYFKLVSKEEETEEEQID
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgaatataagagagagtatacttgagtttatgagagaacaggcatacaaacctatgaat
ataaaggaattgtcagaagtatttacaatagaaaaagccgattataaaatatttaaagaa
ttacttaagaatatggaaaaagaaggacttataattaaaaatagaacagatcattttggg
ttgccggaaaaaatgggacttataaaaggtactcttcagggaaatgctaaaggctttggc
ttcgttataccagaagaggatagaccagatatatatgttccatctgtctacatgaatgga
gctttaaatggtgataaggttgttgcaaaaattcttaaagaaagcgacaatggtaaaaag
tgtgaaggtgaaataataagaattcttgaaagagctaataaaactgtagtgggaatatat
gaaaatagcaaaaattttggatttgtagtagctgatgatgctagaatagcccaagatata
tttatacctaagagcgataaaaatggagccaaaactggagatgtagtaatagcagaaata
acggtatggcctaagaaaagaagaaatcccgaaggaaaaatagtggagataataggaagt
aagggtgacaaaggcgtagatattctaacaataataaagaaacacaagcttccggagaaa
tttccagaaaaggtggagagatttgctgaaggtataccagacgaaattccagagagcgaa
tacaaaagaagaagagatttaaggaatataaaaatggttacaattgatggcgaggatgca
aaggatcttgatgatgctgtatcaatagaaaaaatgccaaatggtaactttaagcttgga
gttcatatagcagatgtttcaaattatgttagagaaaataatccactagataaggaagct
ctaaaaagagcaacctcagtatatcttatagatagagttattccaatgctacctaaaaag
ctttcaaatggcatctgtagtcttaatcccaaacaggataggcttgcaatgagctgtttt
atggaaattgataatacaggtaaggtaattcagcatgatatctttgaaagtgtaattaag
acaaatgaaagaatgacttacacagatgtaactaaaatacttagagatcatgatgaagaa
actattaaagcctatgaatatctatatgaagatttcaaaaacatggaggaattagcttca
atacttaataaaaagaggttatctagaggagcaatagattttgattttgaggaaagtaaa
ataaccctcaatgaacttggaaaaccagtagagataaaaccttatgaaagagctattgca
aatagaataatagaagagtttatgcttgtttgtaatgagactatagcagaacatttttac
tgggctaatataccttttgtttatagagttcatgaagaaccagataatgaaaagttagag
agatttaatgaatttattcataacttaggatatgctgtaagatggggcgcagaagttcat
ccaaagcagcttcaggatgtaatagaaaaaataaaaggtaaaaaagaagaaacagtggta
agtacactacttttaagatctttaaagcaggctagatattcgcctgaatgttcaggtcac
tttggtttagcagcaagatattattgccattttacatcacctataagaagatatccagac
cttataatacacagagtaatgaaggaatatataaatggaagaatggatgaaaatagatct
aaaaaacttatagggacagtagactatgcttcaattcaatcctcagaaatggaaagagtt
gctcaagaagctgaaagggaagttgattccttgaagaaggcagaatatatggcagataga
gtaggagaagaatttgacggtataatatcttctgtaactaacttcggtatatttgtacag
ctgcctaatactatagaaggtcttgtgcacataagtgagctcacagatgactattatatt
tatgatgaaaaatatttaagtcttgtaggtgaaagaactaaaaaaatatataaattaggt
gatgaagcaagaataaaggttgataaagtaaatgtagattctcatgaaatatattttaaa
ttagtttctaaagaggaagaaacagaagaagagcaaatagattaa
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