Clostridium felsineum DSM 793: CLAUR_035240
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Entry
CLAUR_035240 CDS
T08241
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
caun
Clostridium felsineum DSM 793
Pathway
caun03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
caun00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLAUR_035240 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caun03021
]
CLAUR_035240 (rpoC)
03400 DNA repair and recombination proteins [BR:
caun03400
]
CLAUR_035240 (rpoC)
Enzymes [BR:
caun01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLAUR_035240 (rpoC)
Transcription machinery [BR:
caun03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLAUR_035240 (rpoC)
DNA repair and recombination proteins [BR:
caun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLAUR_035240 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
URZ03463
LinkDB
All DBs
Position
3902869..3906417
Genome browser
AA seq
1182 aa
AA seq
DB search
MELNKFDALQIGLASPEKIREWSRGEVKKPETINYRTLKPEKDGLFCERIFGPIKDWECH
CGKYKRVRYKGIVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDMS
PRALEKVLYFASYLVLDPKETPLLKKQLLNEKEYREAADKYGEESFEAGMGAESIKKLLQ
EIDLNQLGEELKENLKTSTGQKRVRIIRRLEVVESFRKSTNKPEWMIMDVVPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKMYQCGLPKE
MALELFKPFVMKKLVETGAAHNIKSAKRMVERVQNQVWDVLEEVISDHPVMLNRAPTLHR
LGIQAFQPILVEGRAIKLHPLACTAYNADFDGDQMAVHVPLSVEAQAESRFLMLAAHNIL
KPSDGKPVCVPTQDMVLGSYYLTIDKDGVKGEGKAFTNVDEALMAYQLGEIDIHAKIKVR
LEKEMDGSIISGIIDTTIGKLIFNESIPQDLGFIDRSVAGNELLLEIDFLVGKKNLGGII
DKCYRKHGPTKTSIMLDKIKAKGYHYSTISAITVSTSDMTVPPNKKNLMSEAEASVEKIE
KMYRRGFISDDERYERVISTWTKTTESVADALMDNLDQFNPIFMMADSGARGSKSQIKQL
AGMRGLMANPSGRIIELPIKASFREGLDVLEYFISTHGARKGNADTALKTADSGYLTRRL
VDVSQDVIVRIEDCGAKEGFEVSEIKEGNEVIESLSERLIGRYTAEDIIDPTNKEVIVKQ
NEYVDEDKALRIEKVGVKKVKIRSVFTCDCKYGVCAKCYGMDMGTAQKISIGEAVGIVAA
QSIGEPGTQLTMRTFHTGGVAGSDITQGLPRVEELFEARKPKGLAIVSEVSGTVRIEETK
KKRIVYVATENGEEVSYDIPFGSSLKVKNGQNVSAGDEITEGSVNPHDIIRIKGVNAVKN
YLLSEVQKVYRLQGVDINDKHLEVVVRQMTRKVKVEDSGDTELLPGTMIDIFDFKEENQK
IEEKGGKPAEARVSLLGITKAALATDSFLSAASFQETTRVLTDAAIKGKSDPLVGLKENV
TIGKLIPAGTGMTRYKSIEIDPVVTEKSSDDEGFMSEDKIEG
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
ttggaattaaataaatttgatgcattgcaaataggattggcttcacctgaaaagataaga
gagtggtccagaggggaagtaaagaaaccagaaactataaactataggacattaaaacct
gagaaggatggtctattttgtgaaagaatatttggaccaataaaagattgggaatgtcac
tgcggaaaatataaaagagttagatataagggtatagtttgtgatagatgtggagtagaa
gtaactaaatcaaaggttagacgtgagaggatggggcatattgaattagctgccccagta
tctcatatatggtactttaaaggtataccatcacgtatgggacttatattagatatgtct
ccaagagcgcttgaaaaggtattgtattttgcatcatatcttgttttagaccctaaagaa
actcctttactaaagaaacaacttttaaatgaaaaggaatatagagaagcagctgataaa
tatggagaagaatcctttgaagctggaatgggtgcagaatcaattaagaagttacttcaa
gaaatagatttaaatcaattgggagaagaacttaaggaaaacttgaaaacaagtacagga
caaaagagagtaagaataataagaagacttgaggttgttgaatcgtttagaaaatctact
aataaaccagaatggatgataatggatgttgtaccagtaatacctccagatttaagacct
atggttcaattagatggtggaagatttgcaacatctgatttaaatgacttgtatagaaga
gttataaacagaaataacagattaaagaaactgttagatctaggagcgcctgacataata
gtaagaaatgaaaaaagaatgcttcaagaagctgtagatgctcttatagataatggtaga
agaggaagacctgtaacaggacctggaaatagacctttaaaatcattatctgatatgctt
aagggtaaacaaggaagatttagacaaaacttacttggaaagcgtgttgactattcagga
cgttctgttatagttgttggtcctgatttaaaaatgtatcagtgtggacttcctaaggag
atggcacttgaattatttaagccttttgtaatgaagaaacttgttgaaacgggagcagca
cataatataaaaagtgcaaaaagaatggttgaaagagttcaaaatcaagtatgggatgta
cttgaagaagttatctctgatcatccagtaatgttaaaccgtgctccgacactacataga
cttggaattcaagcattccaacctattttagtcgaaggaagagcaataaagcttcatcca
cttgcatgtacagcgtataatgcagattttgatggagaccaaatggctgttcacgtacct
ttatcagttgaagcacaagcagaatcaagattccttatgcttgcagcgcataatatatta
aagccatcagatggtaaaccagtatgcgtacctacacaagatatggtacttggatcatat
tatcttacaattgataaagatggagttaaaggtgaaggaaaagcattcaccaatgttgat
gaggcattaatggcatatcaacttggagaaattgatatacatgctaaaattaaagtaaga
ttagaaaaagagatggatggtagtattataagtggaataatagatactactattggaaag
cttatatttaatgaatctatacctcaagatttaggatttatagatagaagcgttgctggt
aatgaattgcttcttgaaattgattttcttgttggtaagaaaaatctaggtggaataata
gataaatgttatagaaaacatggccctacgaaaacaagtattatgcttgataaaataaag
gcgaagggatatcattattcaacaattagcgctataacagtttcgacttctgatatgact
gtaccacctaataagaaaaatttaatgtctgaagctgaagcatcagttgaaaaaattgaa
aaaatgtatagaagaggatttatatctgatgatgaaagatatgaaagagtaatatctaca
tggacaaagacaactgaaagtgttgcagatgcccttatggataatcttgatcaatttaat
cctatatttatgatggctgattcaggagccagaggttctaagagtcagattaagcaactt
gccggaatgagaggtcttatggcaaatccttctggtagaataatagagcttcctataaag
gcttcattcagagagggccttgatgtattggaatactttatttcaactcatggagcgaga
aaaggtaatgccgatacagcgcttaagactgctgattcaggataccttacaagaagactt
gttgatgtaagtcaagatgttattgtaagaattgaagactgtggagcaaaagaaggtttt
gaagtttctgaaataaaagaaggaaatgaagtaattgagagcctatctgaaagattaata
ggaagatacacagcagaagatataattgatcctacaaataaagaagttattgtaaagcaa
aatgaatatgtggatgaagataaagctttaagaatagaaaaagtaggagttaaaaaggtt
aaaataagatcagtatttacttgtgattgtaagtatggagtttgtgcaaaatgttatgga
atggacatgggaacagcacaaaaaataagtataggagaagcagttggtatagtagccgct
caatcaattggtgaacctggtacacagcttacaatgagaactttccatacaggtggagtt
gcaggatcagatataactcaaggtcttccaagagttgaggaattatttgaagcaagaaag
cctaagggacttgcaattgtaagtgaagtatctggtactgtaagaatagaagaaactaaa
aagaagagaatagtatacgtagcaactgaaaacggagaagaagtaagttatgatatacca
tttggttcaagtttaaaagttaaaaatggtcaaaatgttagtgccggagatgaaataaca
gaggggtcagtaaatcctcatgatattattagaatcaagggagtaaatgctgttaaaaat
tacttgctttctgaagttcagaaggtatatagactacaaggtgttgatataaacgataag
catcttgaagttgtagtaagacagatgacaagaaaagttaaggttgaagattcaggtgat
actgaattacttccaggtactatgatagatatatttgactttaaagaagaaaatcaaaag
atagaagaaaaaggtggaaagcctgctgaagctagagtttctctacttggtataacaaaa
gctgcgcttgctactgattcattcttatcagcagcatctttccaagaaacaacgagagtt
ttaacagatgcagcaataaaaggaaaatcagatccgcttgttggattaaaggaaaatgta
actataggaaaattaattccagcaggtacaggaatgactagatacaagagcatagaaata
gatccagtagttaccgaaaaaagttctgatgatgaaggttttatgtcagaagacaaaata
gaaggttaa
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integrated database retrieval system
