Clostridium felsineum DSM 793: CLAUR_040350
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Entry
CLAUR_040350 CDS
T08241
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
caun
Clostridium felsineum DSM 793
Pathway
caun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLAUR_040350 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caun03019
]
CLAUR_040350 (dbpA)
03009 Ribosome biogenesis [BR:
caun03009
]
CLAUR_040350 (dbpA)
Enzymes [BR:
caun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLAUR_040350 (dbpA)
Messenger RNA biogenesis [BR:
caun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLAUR_040350 (dbpA)
Ribosome biogenesis [BR:
caun03009
]
Prokaryotic type
rRNA helicases
CLAUR_040350 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
SWI2_SNF2
AAA_19
Terminase_6N
eIF-4B
Motif
Other DBs
NCBI-ProteinID:
URZ03969
LinkDB
All DBs
Position
4416089..4417534
Genome browser
AA seq
481 aa
AA seq
DB search
MKKLEFKDLGLSEEILESIGKLGYKTPSSIQEKVIPIILKNRDIIAKAKTGSGKTAAFAI
PICEKIELEEKAPQVLVLTPTRELAYQIKEDFLNIGRFKRLRCVSIFGKEPISNQIRELK
QRCHIVVGTPGRILDHIERETLNLSKIKYVVIDEADEMLNMGFIEQVEGILSKLGKNRNT
LLFSATLPETIVNLSKKYMKNAENVEVKDEASSKGEIEELYYKVEAREKFSLLVKLIYKE
LPGSSIVFCRTKDNVEEVFGKMKDKGFICGALHGGMLQQDRIQVMNDFKKGKFTFLVATD
VAARGIDVENITHVINYDIPMEKESYIHRIGRTGRMGNRGKAITFVTMKEERFLKDIENE
FSRDIKEGNMPTKEEVLKGRETLKSTSQKLNKTKHNKIEKLNKDITKLHLSAGRKKKIRP
GDIAGTISSIEGIKPEDIGIIDIHDSFSYVEILNGKGNVVIKAMESKTIKGKKVRAQVAQ
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaactagagtttaaagatttaggattaagtgaagaaattttagagtcaatagga
aagcttgggtacaaaacaccatcaagtattcaggaaaaagttatcccaataattcttaaa
aatagagatataattgcaaaagcaaaaacaggaagtggaaaaacagctgcttttgcaatt
ccaatatgtgaaaaaatagaattagaagaaaaggctccgcaggttttagttttaacacca
acacgtgaacttgcatatcagataaaagaagattttttaaacataggtaggtttaaaagg
ttaaggtgcgtaagtatttttggaaaagaacctatttcaaatcaaataagggagcttaag
cagagatgtcacattgtagttggaactccaggtagaatattagatcatatagaaagagaa
accttaaatctttcaaagataaaatatgttgttatagatgaagcagatgaaatgcttaat
atgggatttatagaacaagtagaagggatactttcaaagcttggaaagaataggaatacc
cttcttttttcagctacactgccagaaaccatagtgaatttatctaagaaatacatgaaa
aacgctgaaaatgttgaggtgaaagatgaagcttcaagtaaaggtgaaatagaggaactt
tactataaggtagaggcaagagaaaaattctcgcttttagttaagcttatatataaagag
cttcccggcagttctattgtattctgtagaacaaaagataatgtggaagaggtatttggt
aaaatgaaggataaaggatttatatgtggtgcccttcatggtggtatgcttcaacaggat
agaatacaggttatgaatgactttaaaaaaggtaaatttacatttctagtagcaacagat
gtagctgcaaggggtattgatgttgaaaacataacacatgtcataaattacgatatacct
atggagaaggaaagttatattcatagaataggtagaactggacgtatgggaaacagagga
aaggctataacctttgttactatgaaggaagaaagatttctaaaagatattgaaaatgaa
ttttcgcgtgatataaaagaaggaaatatgccaacaaaagaagaggttctaaagggaaga
gagactttaaaaagtacctctcaaaagctcaataaaacaaaacataataaaatagaaaaa
ttaaataaagatattacgaagcttcatttaagtgcaggaaggaaaaagaaaataaggccg
ggagatatagcgggaaccatatcaagcatagagggaataaagcctgaagacattggtata
attgatatacacgatagtttttcatatgtggaaatattaaatggtaaaggaaatgttgtt
attaaggcaatggagagtaagactataaaaggcaaaaaagttagggcacaggtggcacag
aaataa
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