Candidozyma auris: CJI96_0001956
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Entry
CJI96_0001956 CDS
T04850
Name
(RefSeq) ATP-dependent_RNA_helicase_SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
caur
Candidozyma auris
Pathway
caur03013
Nucleocytoplasmic transport
caur03015
mRNA surveillance pathway
caur03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
caur00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CJI96_0001956
09122 Translation
03013 Nucleocytoplasmic transport
CJI96_0001956
03015 mRNA surveillance pathway
CJI96_0001956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caur03019
]
CJI96_0001956
03041 Spliceosome [BR:
caur03041
]
CJI96_0001956
Enzymes [BR:
caur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CJI96_0001956
Messenger RNA biogenesis [BR:
caur03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CJI96_0001956
Spliceosome [BR:
caur03041
]
Complex C
Other components
EJC/TREX
CJI96_0001956
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CJI96_0001956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
40028731
NCBI-ProteinID:
XP_028890809
LinkDB
All DBs
Position
2:complement(join(1068535..1069613,1069865..1070087))
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AA seq
433 aa
AA seq
DB search
MSHEGQEELLDYSDSEEIAVQPSTTTTDGDASNNKSADKKGSYVGIHATGFRDFLLKPEL
LRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEIST
LVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGTPMARDVEKLKNKDTCPHIVVATPG
RLHALVEEKGIRLNNIKSFVIDECDKVLESLDMRRDVQDIFRNTPHQKQVMMFSATLSQD
IRPVCKKFMQSPLEIYVDDEAKLTLHGLQQYYIKLDEKEKNKKLSDLLDSLEFNQVIIFV
RSTQRANELNKLLCACNFPSIAVHSGMKQEERIARYKSFKEFNKRICVSTDVFGRGIDIE
RINLAINYDLPSEADQYLHRVGRAGRFGTKGLAVSFISSKEDEEVLEKIQSRFDVKISEF
PEEGVDPSTYMNT
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgagggccaggaagaattgttggactactccgactccgaggagatcgccgtt
cagccatctactactaccactgacggtgacgcctccaacaacaagagcgccgacaaaaag
ggctcctacgttggtattcacgccactggtttcagagactttcttttgaagcctgagttg
ttgagagccattggtgactgtggtttcgagcacccctctgaagttcagcaggtttgcatc
ccccagtccatcttgggaactgatgttttgtgccaggctaagtctggtttgggtaagact
gccgtgttcgtcttgtcgactttgcagcagttagaccccgtcccaggtgagatctccact
ttggtcatttgtcacaccagggagttggcctaccagatccgtaacgagtacgctcgtttc
tcgaagtacatgcctgatgtcaagaccgaagtcttctacggtggtactccaatggccaga
gacgtggaaaagttgaagaacaaggacacttgtcctcacattgttgtggctactccaggt
agattgcacgctcttgtcgaggagaagggtattcgtttgaacaacatcaagtccttcgtg
atcgatgagtgtgacaaggtcttggagtccttggacatgagaagagacgttcaagacatc
ttcagaaacactccccaccagaagcaggtcatgatgttctctgctactttgtctcaggac
atccgtcccgtgtgtaagaagttcatgcagagcccattggaaatctacgttgatgatgag
gctaagttgaccttgcacggtttgcagcagtactacatcaagttagacgaaaaggaaaag
aacaaaaagttgtctgacttgttggactctttggagttcaaccaagtcatcattttcgtc
agatccacccaaagagccaatgagttgaacaagttgttatgtgcctgcaacttcccatcc
atcgccgtccactctggtatgaagcaggaggagagaatcgccagatacaaatcttttaag
gagttcaacaagcgtatctgtgtctctaccgatgttttcggaagaggtattgatatcgaa
aggatcaatttggccatcaactacgatttgccaagcgaggctgaccaatacttgcacaga
gtcggtagagctggtagattcggtaccaagggtttggctgtctctttcatttctagtaag
gaggatgaggaagtcttggaaaagattcagtctagattcgatgtcaagatctctgagttc
cctgaggagggtgtcgacccatctacctacatgaacacttaa
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