Candidozyma auris: CJI96_0002621
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Entry
CJI96_0002621 CDS
T04850
Name
(RefSeq) DEAH-box RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
caur
Candidozyma auris
Pathway
caur03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
caur00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CJI96_0002621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
caur03041
]
CJI96_0002621
Enzymes [BR:
caur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CJI96_0002621
Spliceosome [BR:
caur03041
]
Complex C
Other components
Step II factors
CJI96_0002621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
nSTAND3
Cas3-like_C_2
AAA_16
ResIII
ATPase
PhoH
Flavi_DEAD
SRP54
NACHT
ABC_tran
DUF3008
Motif
Other DBs
NCBI-GeneID:
40029307
NCBI-ProteinID:
XP_028891374
LinkDB
All DBs
Position
2:2546567..2549812
Genome browser
AA seq
1081 aa
AA seq
DB search
MYQSLTETLSRGLNRNVPKSLAETTVRLYKQSGSESRFLESTKALGFSDELAKKVYRFIL
DNLRALDGEVKTKPVKSEDQRQTKKPKVQKLKLDFDDLEEDVGPALSAKESGPKKVQFKK
LKKDMAQKLKEEKNEEIVKMKSEGEPTRSEESQSKTGMENAGLSLSELADAERKREEAQA
LVEEADQLLEPLEDPLSIENDREWYADESIAHQAHVEDYENLESISRPRSRPQRRMCVQR
SGGGFDTATGEYIDYDHNSSEASLLRIPITTHFLIPPFLDGSEGDLRPHFGSAHTSRNTG
PSVSAIKDPESELAETAKNGSNIVKDRRAKKERAQQAKERAIGDGGISSVVQEKTEVSKK
QTVKENEEKVPFETIQEQRRSLPAYQVRDKLMRVIAENQVVVVIGETGSGKTTQLTQFLC
EEGFAKNKEKHGSRLLVGCTQPRRVAAMSVAKRVSEEMGCKLGEEVGYSIRFEDRTHPRK
TLIKYLTEGILLREMLADPHLEQYSCIIMDEAHERTLNTDILLGLFKKLLQKRRDLRLIV
TSATMNAERFSRFFGEAPQFTIPGRTFPVETFYSKSPCPDYVDTAVKQVMTIHLANQGRQ
GDILVFMTGQEDIETTCEMIQEKLDMLENPPPLDVYPIYSTLPADIQKKIFNKSSAERRK
VVVATNIAETSLTVDGIKFVVDCGLVKLKLFNPKLGMDILQVVPIAMANAQQRSGRAGRT
GPGIAYRLYTDRAADPSQMHVQPIPEIQRTNLSSVMLMLKSLHVKDILQFPFLDPPPQDL
LSCSLYDLWAIGALDNTGALTALGEQLNVFPMEPTLAKLILLSTKEEFHCSREVIIIVSM
LSVPNVFYRPKERADEADAARDKFLIADSDHLTLLNVFEQWESRAKQHKGTLSSWCARNF
LHYRSLIRAKDIYNQIMLIMNKRKYPVLKSKSDSDIRKCLCAAYYQQSAKLVKMGGGRGQ
VEYANLRQAYMSMYIHPTSALAGGGDLSPPYVIYDELVLTSKEYMQCVTAVEPEWLLKYG
HVFYGVNSSVRQQIETSLGFTIVSKYDWEKRIEEDRQRMRARVVTKSVEKPTTLNRVRRG
F
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgtatcagagtctcacggagacgctatcgagaggactcaatcggaatgttcccaaatcg
ctagcggaaactactgtccgtctttataaacagagtggactggaactgcgtttcttggag
tccaccaaagcactaggatttctggatgaattggcgaagaaggtgtacagatttatcttg
gacaatttgagggctttggatggagaagtgaagacaaagccggtgaagagtgaggatcaa
agacaaacaaagaagccgaaagtgcagaaactcaaattagactttgatgacttggaagaa
gacgtgggtccagccttgctggccaaggagagtgggcccaagaaggtgcaatttaagaag
ttgaagaaggatatggcacagaaattaaaggaggagaagaatgaggagattgtgaaaatg
aagagtgaaggtgagcccactagaagtgaagagagccagtcgaagacgggtatggaaaat
gctggcctttcgctttcggagcttgcagatgccgaaagaaagcgtgaggaggcgcaagcg
cttgtggaagaagcagaccagctactagagcctcttgaagatcccctcagtatagagaac
gacagagagtggtatgctgatgaaagtatagctcatcaggcgcatgtggaagattatgaa
aatctagaaagcatttcaagacctcgaagtaggccgcagaggcgaatgtgtgttcaaaga
agcggcggtggcttcgacactgccacaggagagtatattgactacgaccacaactcgtca
gaggcgctgcttttacgaatccccatcacaacgcactttcttattcctcccttcttagat
ggctcagaaggtgatttacgaccccattttgggagtgctcacacttcaagaaacacaggg
cctagtgttagtgcaataaaggatccagaatccgaactcgctgaaaccgccaaaaacggc
agcaatatcgtgaaggatagaagggccaaaaaagagcgtgcgcaacaggcgaaggagaga
gctataggagatggtgggatttcttctgtagttcaagagaagactgaagtcagcaagaag
cagacggtcaaggaaaacgaggaaaaagtaccgtttgaaacgatccaagaacaacgaagg
agcttacctgcgtaccaagtccgtgataagctcatgcgagtcattgcagagaatcaggtc
gtggtcgtgatcggtgaaacaggttcgggtaaaaccacacagctaacacaatttctttgt
gaggagggttttgcaaaaaacaaagaaaagcatggaagcaggcttctagtggggtgcacg
cagcctaggcgtgtggctgccatgtctgttgcaaagagagtttcagaagagatgggatgt
aaactcggagaggaagtcgggtactccatcagatttgaggacagaactcatcctcgaaag
actctcatcaagtacctaacagaaggaattttactccgagagatgctagcagatcctcat
ctcgagcagtactcatgtatcatcatggatgaagcacatgagagaacattgaacactgac
atcttgctagggcttttcaagaagctccttcaaaagcgaagagacttaagactcattgtc
actagtgctaccatgaacgctgaaaggttttctcgtttttttggtgaagcaccgcaattc
accattcccggcagaacgtttcccgtggagacgttctactccaagtctccttgtccagat
tatgttgacactgcggtcaagcaggtaatgacaatacatttagcaaaccaggggcgtcaa
ggtgacattttggtctttatgactggtcaagaggatatcgagactacttgtgagatgata
caggagaagttggacatgctagagaacccaccaccgcttgatgtgtatccgatatactcc
acattgcccgcagatatacaaaagaagatcttcaacaagctgagtgctgagcgaagaaaa
gtagtggtcgctacaaacatcgcagaaacgtccttgactgttgacggtatcaagtttgtc
gttgattgtggccttgtcaagctcaaattattcaatcctaagctcggtatggatatctta
caagtcgttccgattgccatggccaatgcccaacaaaggagtggtcgtgctggtagaact
gggccaggtattgcctacagactctacactgatagagcagcagacccgtcacaaatgcac
gtacagccgattccggaaatacaaagaacgaacctcagttccgtgatgttgatgctcaag
tcacttcatgtcaaagacattcttcagttccccttcttggaccctcctcctcaagatctc
ttgagctgctcgctttatgatctctgggccattggtgcgcttgacaacaccggtgcattg
acagctctaggtgagcaactaaacgtatttcccatggaacctacactcgcaaaactcata
ttgctttctacaaaagaagaatttcactgctctcgtgaggtcatcataattgtttcgatg
ctctctgtcccgaatgtattttatagacccaaggaaagagctgatgaagcagatgcagca
agagacaagtttttgatcgccgacctggaccacttgacgttgttgaatgtctttgagcag
tgggagctgcgtgcgaagcaacataaaggcacgttgagctcatggtgtgctcgtaatttc
cttcattatcgatctttgattcgagcaaaggatatctacaaccaaattatgcttatcatg
aacaagcggaagtacccggtgctcaaatccaagtcggacagcgatataaggaagtgtttg
tgtgctgcttactaccagcagctggccaagctagtgaagatgggaggaggtagaggtcaa
gttgaatacgccaatcttcgtcaagcgtatatgtctatgtacatccacccgacgtcagct
ttagcaggaggcggcgatctaagtcctccatatgtgatatacgacgagttggtgctcacg
agtaaagagtacatgcaatgtgttacagcagttgagccggagtggttgctcaagtatggg
catgttttctacggggtgaattcgagtgtcagacaacagatagaaacatctcttggattc
accattgtgagcaagtatgactgggagaaacgcattgaagaggataggcaacgcatgagg
gcccgagttgtgaccaagagtgttgagaagcctaccacgctcaaccgtgtccgtagagga
ttctag
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