Corynebacterium auriscanis: CAURIC_07965
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Entry
CAURIC_07965 CDS
T09334
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
caus
Corynebacterium auriscanis
Pathway
caus03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
caus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CAURIC_07965 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caus03400
]
CAURIC_07965 (mfd)
Enzymes [BR:
caus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CAURIC_07965 (mfd)
DNA repair and recombination proteins [BR:
caus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CAURIC_07965 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WJY73207
LinkDB
All DBs
Position
complement(1820996..1824763)
Genome browser
AA seq
1255 aa
AA seq
DB search
MSSKTSDQPRHTTAPALSGLLKAVSQDSKLRGLVTHIGDHSLHMQGPEGVWPFAVGAVAS
QAPVLVVTATGRQAQDLTEILRAMVGSAVEMFPAWETLPHERLSPGVETVAARMRVLRRL
REDWGDDAPRGPKQNPSGLRIVVASARAVLQPVQENLGDVEPIRLVEGQDLSFDDLPDRL
VELGYTHVDVVAKRGHFAIRGGIVDIFPATEELPVRVDFWGDEVSEVRAFSVGDQRTIPN
LQLDDVTVYPCRELLLTNEVREKARQLAQEHAGNAELAELFDKISQGISVQGMEALIPAL
RTSDLVALPALMLEGTHTIVTTPAAVKRRAVDLAETGKQFMEAGWEVAAMGGAMPLDGVA
YMSLEGLQQVQKNLHRPWWTLSPVGVADFGDADTEDSASSGTLDDDVLSLDYATAPTPHG
DMEAIGAVMADIRKRVESGGRVVFAAPTPAVVARMVRRFKEAGIAVQPIGVDLAGSRGLG
RLPKTTLTPADEPAPKHVSIYHAVAHQGLDFPFAGDDKHSSLLFITETDLTGNRVDAKAT
GKRKPAKKRNRVDPLALEPGDLVVHDSHGIGKFVRMEERTIGKGADASRREYLVLEYAPS
KRGGPGDQLYVPMDQLDLLSRYVGGEKPALSKMGGADWKNTKRKARGAVREIAGELVQLY
ATRQAAPGYAFGADTPWQREMEEAFPYTETEDQFNAIEAVKADMEKPVPMDRVIVGDVGY
GKTEVAVRAAFKAVQSGKQVAVLVPTTLLAQQHFNTFTDRMQDFPTTIRELSRFTSPAES
REVIKAMADGTVDIVIGTHRLLQTGIQWKNLGLVIVDEEQRFGVEHKEHIKSLRTHVDVL
TMSATPIPRTLEMSMAGIREMSTILTPPQDRHPVLTYVGQQEDKHVAAAIRRELLRDGQV
FYVHNRVKTIERAADHLRRLVPEARVVVAHGQMSEEQLETTVKGFWDREFDVLVCTTIVE
TGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPPGEVLTETSYDRLTT
IAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAFRAMADG
KVVDGTEEEKKEIRIDLPVDAHIPVEYVASERLRLEAYRKFAAAEDNEQIAIVLEELRDR
YGEPGEEIHMLAALSRLRLLCRDLKVTEVVAVGSKISFSPIQLEDSGQVRLKRLFPSANY
RATTKVVLIPAPKKGAGMRAVPLREMELVQWVADSLTQMAGIPSRNMSGIEAASR
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atgagttcaaagacctcggatcagccgcgccacacaaccgcacctgcactatccggcctg
ctcaaggccgtgagtcaggattccaagctgcgcggtttggtgacccatatcggggatcac
tctctgcacatgcagggccctgagggtgtgtggcctttcgcggtcggcgcggtcgctagc
caggcccctgtcctcgtcgtcacggcaaccggtcgccaggcgcaggacctcaccgagatc
ctacgggccatggtgggctccgcggtggagatgttccctgcctgggaaacccttccgcac
gagcgcctctcgcctggcgtggagacagttgcggctcgtatgcgggtgctgcgccgtttg
cgtgaggattggggggacgacgccccgcggggcccaaagcaaaacccctccggcttgcgc
attgtggtggcctcggctcgcgcggtgctccaaccggtgcaggaaaacttgggggatgtg
gagccaattcggttggtggagggccaggatctcagcttcgatgacctcccagatcgtctt
gtggaactgggttatacgcatgtggacgtggtggcgaagcggggccacttcgctatccgt
ggtggcattgtcgacattttccctgcaacggaagaactaccggtgcgtgtggatttctgg
ggcgatgaggtctcggaggtgcgcgcgttcagcgtgggcgaccagcgcacgatccccaac
ctccaactagatgacgtgacggtgtacccgtgccgggagcttctactgaccaacgaggtc
cgggaaaaagcccggcagctagcccaagaacacgcaggcaatgcggaactggcggagctc
ttcgacaagatcagccagggtatctccgtgcagggcatggaagcgctgatcccggccctg
cgcacgtcagatctggtggcccttcccgcgttgatgctcgagggcactcacacaatcgtg
acaaccccggccgcagtgaagcgtcgtgcggtggacttagcggaaaccggcaaacagttc
atggaagccgggtgggaagtcgccgcgatgggtggagctatgcccctcgacggcgtggcg
tacatgtcgctcgagggattgcaacaggtgcaaaagaacctgcatcgcccgtggtggacc
ctatcgccggtgggtgtggcggatttcggggacgcggatacggaagactcggcgtccagc
ggaactctagatgacgatgtgctcagcctcgactatgcaactgcccccacaccccacggg
gatatggaggctatcggtgcggttatggccgatatccgaaagcgcgtggaatccggcggc
cgggtagtcttcgcagctcccacgcccgccgttgtagctcgcatggtgcgtcgcttcaaa
gaagccggaatcgccgtccaacctatcggcgttgaccttgcgggatcccgaggcctgggc
cgattgccgaagaccacgctcaccccagcggatgagcccgcacctaagcatgtcagcatc
tatcacgcagtcgcgcaccaggggctagatttcccatttgccggggatgataagcactcc
agcttgctgttcattaccgaaaccgacctgaccggtaaccgtgtggatgccaaagcaaca
ggcaagcggaaaccggccaaaaagcgcaaccgcgtggatccactcgcgctggaaccaggc
gatctggtggtccacgattcccacggcatcggcaaattcgttcgcatggaagagcgcact
atcggcaagggcgccgatgcctcgcgccgggaatacttggttctggaatacgcgcccagc
aagcgcgggggtccaggtgaccagctgtacgtgcccatggaccaactggacttgctctcc
cgatacgtgggtggggaaaagcccgcactgtcgaaaatgggaggtgccgattggaagaac
accaagcgcaaagcccgcggcgcggtacgcgagatcgccggtgaattggtccaactgtat
gccacccgccaagccgcgccggggtatgccttcggcgccgatacaccctggcagagggag
atggaggaggccttcccgtataccgaaaccgaagatcagttcaacgcaatcgaagcggtg
aaagccgatatggaaaaacccgttcccatggaccgcgtgattgtgggcgatgtgggttac
ggcaaaacggaagttgcggtgcgcgcagcatttaaggcagtgcagtccggtaaacaagtt
gcggttcttgtccccaccacgttgttggcgcagcagcacttcaacacgttcaccgaccgc
atgcaggatttccccacgacaattcgcgagctatcgcggtttacctcgcccgcggaatca
cgcgaagtaatcaaggcaatggccgatgggacggtcgacattgtcatcggcacacaccgc
ctcctgcagaccgggatccagtggaagaacttgggcctagtgattgtggatgaagagcag
cgttttggcgtcgagcataaagagcacatcaaatcgctgcgcacccatgtggatgtgctg
accatgtccgctacaccgattccacgcacgttggagatgtccatggcagggattcgggaa
atgtcgaccattctcacgcctccgcaggatcgccaccccgtgttgacgtacgtagggcag
caagaggataagcacgtggccgcggccatccggcgtgaactgttgcgcgatgggcaagtg
ttttacgtgcacaaccgcgtgaaaacgattgaacgggccgctgatcacctgcgccggttg
gtgccagaagcccgcgtggttgttgcccacgggcagatgagcgaggaacagctggaaacc
accgtcaaggggttctgggatcgcgaattcgacgtgctggtgtgtaccacgatcgtagaa
acgggattggacattgccaatgccaacaccctgatcgtggaaaacgcccaccacatgggc
ctatcccagctgcaccagctgcgcggtcgagtgggccgttcgcgtgaacgtgggtatgcg
tacttcttgtacccgccgggtgaggtgctcacggaaacatcctacgatcgactgaccaca
atcgcgcagaataacgacctgggcgctggtatggccgtggcgatgaaggacttggagatg
cgcggcgccggtaatgtgctgggcgccgagcagtccgggcatatcgccggagtgggcttt
gacctgtacgtccgcttggtcggggaggccgtcgaagcattccgcgcgatggccgacggc
aaagtggtcgacggaacggaagaggaaaagaaggaaatccgtatcgatttgcccgtggat
gcacacattccggtggagtacgtggccagcgagcgcctgcgtttggaggcataccgcaag
ttcgccgcggccgaggataacgagcagatcgcgatcgtgctggaggagttgcgcgaccgc
tatggcgagcccggcgaggagatccacatgctggccgcgctctcccgactgcgccttctg
tgccgcgacttgaaggtcacggaggttgttgccgtggggtcgaagatcagcttcagtccc
atccagctggaggattccggccaggtgcgtttgaagcgactgttcccctccgcgaactac
cgcgcgaccacgaaggttgtgctgattccggcgcctaaaaagggcgcgggaatgcgggcg
gttccgctgcgggaaatggaacttgtgcaatgggttgcggactcgctcacgcagatggcg
ggcatcccatcgcggaacatgagtggaatagaggcagcgagcaggtaa
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