Corylus avellana (European hazelnut): 132161718
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Entry
132161718 CDS
T09426
Name
(RefSeq) polyadenylate-binding protein 7
KO
K13126
polyadenylate-binding protein
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03015
mRNA surveillance pathway
cave03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132161718
09123 Folding, sorting and degradation
03018 RNA degradation
132161718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132161718
03041 Spliceosome [BR:
cave03041
]
132161718
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132161718
mRNA cycle factors
Stress granule specific factors
132161718
Spliceosome [BR:
cave03041
]
Complex C
Other components
Complex C specific factors
132161718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RBD_DEAH11
RRM_occluded
RRM_RdRP1_2
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
132161718
NCBI-ProteinID:
XP_059427878
LinkDB
All DBs
Position
ca9:1154997..1160787
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AA seq
626 aa
AA seq
DB search
MAVSQTVTASLYVGDLHPDMTDGQLYDAFSQFKSLASVRVCRDTSSGRSLGYGYVNFLST
DDAIHAIEVKNHTTLNGKLIRVMWSLRDPDARRSGKGNVFVKNLNESIDNLGLQDMFQKF
GNILSCKVAMSEDGKSRGYGFVQFEGEESANDAIEKLNGSTFGDRQIYVGKFVKRSERIL
PSPDAKFTNLYVKNLDPDVTEEVLQEKFSKFGKIASLVIRKEDNGMSRGFGFVDFDNPDD
ARQAMEAMNGSQLGSEVLYVARAQKKAEREQILRHQFEEKRKEQIIRFKGSNVYVKNIDD
NVTEEELREHFSQCGTITSVKLMQDNKGICKGFGFVCFCTPEEANKAVITFHGYMFHGKP
LYVTIAQRKEDRQAQLQLQYAQRMAGLAGHSTTIIPGGYPPYYYTTPSGVVSQVPPRPTM
MYQHLGLRPGWGANGFAPPARPGFQPSPVPVIPNTQRQNRQNRGRMNGHMLPQGGVHSFS
YMPQSVTSSKELTNQQRAKYVPNGRQHEMNKGSGVSSTAFISVGSGPQASEMLSSTLAAS
SPEHQKQILGERLYPLVLKHKPDLAAKITGMLLEMDNSELLLLLESPESLVAKVEEAVEV
LKYSKTKASGQETLHSSYLSAEVAVN
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgtctcagacggtgacggcgtcgctctacgtgggtgacctccacccggacatg
acggacggccagctctacgacgcattctcccagtttaagagcctcgcgtccgtgcgcgtc
tgcagggacacgtcctcggggaggtcgctcggctacggctacgtcaacttcctctctacc
gatgacgcgattcatgctattgaggtaaagaatcacactaccctgaatggcaagttgata
agggtgatgtggtcgcttcgtgatcctgatgcaagaagaagtggtaaagggaatgtgttt
gttaagaacttgaatgaatcaatcgataatctggggcttcaagatatgtttcagaaattt
ggaaatattttgtcttgcaaagttgctatgtcagaggatgggaagagtagagggtatggc
tttgttcaatttgagggtgaggaatctgcaaatgatgcaattgagaagctaaatggatcc
acttttggagacaggcagatatatgttgggaagtttgtcaaaaggagcgaaaggattttg
cccagcccagatgctaaatttacaaatttgtatgtgaagaatttggatccagatgtcact
gaagaggttctgcaggaaaagttctccaagttcggaaaaattgctagcttggttatcaga
aaggaagacaatgggatgtcaagaggttttggctttgtagactttgataacccagatgat
gcaagacaggcaatggaagcgatgaatggatcacaacttggctcagaagttctatatgta
gcaagggcacagaagaaagcagagcgtgagcaaattttacgtcatcaatttgaggagaaa
cgtaaagagcagatcataaggttcaagggttcaaatgtctatgtgaagaacattgatgat
aatgtcacggaggaggagcttcgagaacacttcagtcagtgtggcacaattacttctgtg
aagcttatgcaagataacaagggaatatgtaaggggtttggatttgtctgcttttgcacc
cctgaggaggccaataaagctgtgatcacttttcatggatacatgtttcatgggaagcca
ctgtatgtgactattgctcaaaggaaagaggatagacaagcacaattgcagcttcagtat
gcacaacgcatggcaggactagcagggcattcaactactattatccccggtggatatcct
ccttactactacacgactccatctggtgttgtttcccaagtgcctcctcggccaaccatg
atgtatcagcatctgggattgaggccaggatggggggctaatggctttgcacctcctgcc
agaccaggctttcaaccatctccagttccagtaattcctaatacccaaaggcaaaatagg
caaaacaggggcaggatgaacgggcatatgcttccacagggtggtgtacactctttttca
tatatgccacaatcagtgacttcttcaaaagagctaaccaatcaacagcgggctaaatat
gtgccaaacggccgtcaacatgagatgaacaaaggatctggagtctcatctactgctttt
atctctgttggatccgggccacaggcgtcagagatgctgagtagcacgcttgctgcttct
tcccctgagcatcagaagcagatactcggcgagcgtctgtaccctcttgtcctgaaacac
aagcctgaccttgctgcaaagattacggggatgcttttggagatggataactcggaattg
ttgcttttgttggagtcaccagagtctctggtggccaaagtggaagaagctgtggaagtt
ctcaagtactccaagaccaaagcatctggtcaagaaacccttcattccagttacctatct
gctgaggttgcagtcaattga
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