Corylus avellana (European hazelnut): 132163946
Help
Entry
132163946 CDS
T09426
Name
(RefSeq) putative tRNA pseudouridine synthase isoform X1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
cave
Corylus avellana (European hazelnut)
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cave03016
]
132163946
Enzymes [BR:
cave01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
132163946
Transfer RNA biogenesis [BR:
cave03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
132163946
Prokaryotic type
132163946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
CDH1_2_SANT_HL1
Motif
Other DBs
NCBI-GeneID:
132163946
NCBI-ProteinID:
XP_059430315
LinkDB
All DBs
Position
ca10:complement(22021710..22027346)
Genome browser
AA seq
512 aa
AA seq
DB search
MAISSLRFPLSPYLRKNPHSTPTPNFRLFRISILPLRPHCSSSSSSSSSTHKWQPFRKKK
VVIRVGYVGSDYRGLQMQRHDSSLSTIEGELEGAIFKAGGISDSNYGNLYKIAWARSSRT
DKGVHSLATTISLKMEIPENAWKEDPYGMALANYINSHLPKNIKVFSILPAQKSFDPRRE
CNLRKYSYLLPAEIIGIKSNFSTAEVDYHLSDFNNILNAFEGEHPFHNYTVRSKYRKQFP
AKQSLGNGNVPGKARSSSEASACEFEESDGDEDFVIDEAIALDAERMSKSSSEFNVFHEH
LADTCNKHEKDQKAHTTNSAVLARWLHEPDEKDRISASHFRKIFCCSSGKLEKSLGFPYV
ELSIWGESFMLHQIRKMVGTAVAVKRSLLPRDIITLSLAKFSRIVVPLAPSEVLILRGNS
FSIRNKPGDVKRPEMVTIVESEEILKAVDQFYTSVMLPEVSKFLDPSSSPWKDWVEKLDE
HTSIPDAQLDEVRNAWKLWKEKFQSSTLLHQS
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggccatctcatctcttcgtttcccgctctccccatacctccgcaaaaacccacactca
accccaaccccgaacttcagacttttcagaatctcaatactacccctacgaccacactgt
tcttcttcttcttcttcttcttcttccacccacaaatggcaacctttccgcaaaaagaaa
gtcgtcattcgggtcggctacgtcggatccgattacagaggtctgcaaatgcaacgacac
gattcctcattatccacaattgaaggagaattggagggggccatatttaaggctggtggg
attagtgatagtaattacgggaatctctacaaaattgcgtgggcaagaagtagccgtact
gataaaggagtgcactccttggcaacgactatatcattgaaaatggaaatccctgaaaat
gcatggaaagaagatccctatggcatggctcttgcaaattacatcaactctcatcttcct
aaaaatataaaagtctttagcattttgcctgcacagaagagctttgatcctagaagggag
tgtaatctccggaagtattcttatctccttcctgcagaaatcattggaatcaaaagtaac
tttagcacagctgaggttgattatcatctgtcagacttcaataatatattaaatgcgttt
gagggagaacatcctttccacaattatacagtacggtccaagtacaggaaacagtttcct
gcaaaacaatcacttggaaatggtaatgttcctgggaaagcaagatcatccagtgaggca
tcagcctgtgagtttgaggaaagtgatggagatgaagattttgtgattgatgaagcaatt
gcactagatgctgagaggatgagcaaaagttcttcagaattcaacgtttttcatgaacat
ctagctgacacttgcaataagcatgaaaaagatcagaaggctcacactaccaattcagct
gtccttgcaagatggttacacgaacctgatgagaaggacaggataagtgcttcccacttc
agaaagatcttttgctgttcttctggaaagctggagaaatcacttggatttccttatgtt
gagctttctatatggggagagtctttcatgttacatcaaatccgcaaaatggttgggact
gctgtggcagtaaagcgcagcttactccctagagatattataacattgtcacttgccaag
ttctcacggatcgttgtaccccttgccccatctgaagttttgattttgaggggaaatagt
ttctctatcagaaataaacctggagatgtaaagaggccggaaatggtgacaatagttgaa
tcagaagaaattttgaaagcagttgaccagttctacacatctgtaatgttgcctgaagtt
tcaaagtttttggacccttcgagttctccttggaaggactgggttgaaaaattggatgag
catacaagcattccagatgcacaattggatgaagtcagaaatgcttggaagttgtggaag
gaaaagtttcagagtagcacactgttgcatcagtcataa
DBGET
integrated database retrieval system
