Corylus avellana (European hazelnut): 132164328
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Entry
132164328 CDS
T09426
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03018
RNA degradation
cave03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132164328
09123 Folding, sorting and degradation
03018 RNA degradation
132164328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132164328
03041 Spliceosome [BR:
cave03041
]
132164328
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132164328
mRNA degradation factors
5'-3' decay
Lsm complex
132164328
Spliceosome [BR:
cave03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
132164328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
132164328
NCBI-ProteinID:
XP_059430803
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Position
ca10:1790205..1796149
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AA seq
99 aa
AA seq
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MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFLQPDGV
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggacgcaaagaaacagttttagatcttgccaaatttgttgataagggtgtccaa
gtcaagcttactggtggacgacaagtcacagggaccttgaaaggttatgaccagttgctg
aacctcgtccttgatgaagccatagaattcttgagagatccagatgaccctcttaagacg
actgatcaaactagacgccttggcctaatagtatgtcggggtacggccgtgatgcttgtt
tccccaactgatggtactgatgagattgcaaacccgttccttcagccggatggggtgtag
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