KEGG   Corylus avellana (European hazelnut): 132164357
Entry
132164357         CDS       T09426                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
cave  Corylus avellana (European hazelnut)
Pathway
cave03018  RNA degradation
cave03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cave00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    132164357
  09123 Folding, sorting and degradation
   03018 RNA degradation
    132164357
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cave03019]
    132164357
   03041 Spliceosome [BR:cave03041]
    132164357
Messenger RNA biogenesis [BR:cave03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     132164357
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     132164357
Spliceosome [BR:cave03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    132164357
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 132164357
NCBI-ProteinID: XP_059430838
LinkDB
Position
ca10:complement(1734271..1740035)
AA seq 98 aa
MSTGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISIVGELDEELDSSLDLSKLRAHPLKPVIH
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtcaactggccctggacttgaatcacttgtagatcaaactatatcagttatcacaaat
gatggacgcaatatagtgggagtcctaaaaggctttgaccaggcaacaaatattatcctt
gatgaatctcatgaacgtgtctactccacaaaggaaggtgttcaacaacttgtgttgggt
ttgtacataataaggggcgataacataagcattgtcggggagctggatgaagagcttgat
tctagtcttgatttatcgaagctgagagctcatcctctcaagcctgtcatccattga

DBGET integrated database retrieval system