Corylus avellana (European hazelnut): 132164521
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Entry
132164521 CDS
T09426
Name
(RefSeq) uncharacterized protein LOC132164521 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03013
Nucleocytoplasmic transport
cave03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132164521
03015 mRNA surveillance pathway
132164521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132164521
03041 Spliceosome [BR:
cave03041
]
132164521
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132164521
Spliceosome [BR:
cave03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
132164521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
LsmAD
Motif
Other DBs
NCBI-GeneID:
132164521
NCBI-ProteinID:
XP_059431022
LinkDB
All DBs
Position
ca10:19148490..19154753
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AA seq
879 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLMKSQKFAPELEHLVEMTKVKMDVIRPWIANRVTELL
GFEDEVLINFINSLLEKKVVNGKEVQISLTGFMEKNTAKFMKELWTLLLSAQKNASGVPQ
QFLDAKEEETRKKKAEADRIAFEIEKKKDKERELEQERSKKMDGMVDARATNSGLEPNSK
PRASSHRPEDEEEAGKRNNGVRGRYRVSRSPHSARHSPSSPRGSPSRSMSRSLSNPRSYS
GGRHQSRSLSRSPGAQGRSVSSERVYRSPRRRSVTPRRRNSPLHSPSPSRRRSSYSRRRS
RSRSPYRSPSPVRRRPRSPFRRRSPSPVRRRRSPSPFRRRRSPSPIRRRRSPSPVRRRRS
PSPFRRRSPPLVHRGSPSHVRRRSPSPIRRRSPSPIRRRSPSPLRKGPLSPVRRRYRRSP
TPRRSSPSLLRHRSPIPSRRRSPIPPRRRSPPYGSSSPSPIQHTSPSPIRRKSPKHPRSP
VRSSKERIRAQEKLSPLAQRLSSSLRSPQRDARNRSETRNKVSVSMSSPEKSPTPSKSPP
PARKRVPSEDRRSFSPYQSPVRQAGKQMIRDGSFSPARKPCHDSLEISEEGEEPKYAREE
DVDPKSKPSHKRSMLSSAVNKQKDSPVKVHHKEGHSPKRLADYRATESQARSDNMELRKK
EEETKSEKSSRRGVRPESPGQQKSPSLYKESLVGDRQHPAYPGDGKISDEKNRSRSNDVD
NSRRRSETVQDSVGKVYHNKQAAPDDSSSEESDKHRTEEKKRRKHKRSERKELASDDSYD
SELEDRKEAKKRRKEEKKLRKEEKRRRREERRRRREERRAEKLKVKNQDGAYASDGERTA
RRESHPSDDEDMQTEQTKLEIELRKKALESLKAKKGISH
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcttcttccggggcacgtcggcggaccaagacactcggttttcgaacaag
caagcgaagcttatgaaatcgcagaagtttgctcctgaattggagcacctggtggaaatg
acgaaggtgaagatggatgttatcagaccgtggattgctaatagggtgaccgagcttctt
gggttcgaagacgaagttcttattaacttcattaacagtcttttggagaaaaaggtagtg
aatgggaaggaggttcaaatttcacttactggattcatggagaaaaatactgcgaagttt
atgaaagagctatggacgcttcttctcagtgcacagaagaatgcaagtggtgttcctcag
cagtttttggatgccaaagaagaagaaactaggaagaagaaggcggaggcagataggata
gcctttgagattgagaagaagaaagataaggaaagagaacttgagcaagagaggtcgaag
aaaatggacggcatggttgatgcgagggcaactaactctggtttggagccaaactcaaag
cctagggcttcgagtcaccgtcctgaggatgaggaagaagctggcaagaggaataatggc
gtgagaggaaggtacagggtttccagatctcctcattcagccagacattccccttcatcc
cctcgaggttctccatctaggtcaatgagcaggtcgttatctaatcccagaagttattca
ggtggcagacaccagtcaagaagtttatctaggtcacctggagctcaagggcgctctgtt
tcttcagaaagggtgtatcgctccccacgaagacggtctgtgacgcctcgtcgaaggaat
tcgcctttgcattccccatctccttctagacgaagatcatcttattctaggcgaagatct
aggtcacgctcaccttatagatcaccttctccggtgaggcgtcggccgcgttctcctttt
cgtcgtaggtcaccttctcctgtgcgacgccgtagatcaccttctccttttcgacgccgt
aggtcaccttcacctatccgacgccgtagatcaccttcgcctgtgcgacggcgaagatcc
ccatcaccttttcgacgcagatccccacctcttgtgcaccgtggatcaccctcacatgtt
cggcgcagatcaccctcacctattcggcgcagatcaccttcacctattcgacgtagatca
ccctctcccttacgaaaaggaccactgtctcctgttcgacggcggtataggagatctcca
actccacggcgcagctctccttcacttctgcggcataggtcacctattcctagtcgcagg
agatcaccaattcctccccggcgtaggtctccaccctatggatcaagttctccatccccc
atacaacatacatctccatccccaattaggaggaaatctccaaagcacccgaggagccct
gtccgatcatccaaagaaaggatcagggcacaggaaaaattgtctcctttggcacagcga
ttatctagttctttgagatcaccgcagagagatgcacggaatcggagtgaaacccgcaat
aaagtgtcagtttcgatgtcttcaccagagaagtctccaactccctcaaaatctccacca
ccggcaaggaaaagggttcccagtgaagataggaggtcatttagtccataccagagtcct
gtgaggcaagcagggaagcaaatgattcgtgatggaagcttcagtcctgcacgaaaacct
tgtcatgacagtctagaaattagtgaagagggtgaagaacctaaatatgccagggaggag
gatgtggatcctaaatctaagccttcgcataaaaggtccatgctttcatctgctgtcaac
aagcagaaagattcacctgtgaaggtccatcacaaggaaggacattctcctaaaagatta
gcagattatcgggctactgaatcccaggctcgttctgataacatggaattgagaaagaaa
gaagaggagacaaaaagtgagaaatcttctaggaggggggttcgtcctgaatctcctggt
caacaaaagtcaccctcattgtataaagaatctttagtaggtgataggcaacatccagca
taccctggagatggtaaaatatctgatgagaagaaccggtctcgttcaaatgatgtggat
aacagtagacgtcgttcagaaactgtacaagattctgttggaaaagtttatcataataaa
caggctgctccagacgattccagttctgaggaaagtgataagcacagaactgaagagaag
aaaaggagaaagcataaaagatctgagaggaaagagcttgcttcagatgatagttatgat
tctgaattagaggataggaaggaggctaagaagagaaggaaggaggaaaagaaacttcgg
aaggaggaaaaacgtcgacggcgtgaggaaaggcgtcggagaagggaagaacggcgtgca
gagaagctgaaagtgaagaatcaggatggtgcttatgcttctgatggtgaacgtactgca
aggagggagtctcatccaagtgatgatgaagacatgcagactgagcagacaaagcttgag
attgagttacggaagaaggctctcgaatcacttaaagctaagaagggcatcagtcactaa
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