Corylus avellana (European hazelnut): 132165289
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Entry
132165289 CDS
T09426
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132165289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cave03041
]
132165289
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132165289
Spliceosome [BR:
cave03041
]
Complex C
Other components
Step II factors
132165289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11
KH_DEAH11_1st
Helicase_C
OB_NTP_bind
DEAD
IBR
AAA_19
IBR_1
AAA_22
KH_Vigilin
ResIII
ABC_tran
KH_1
HA2_N
AAA_29
T2SSE
Motif
Other DBs
NCBI-GeneID:
132165289
NCBI-ProteinID:
XP_059431769
LinkDB
All DBs
Position
ca11:3139845..3149268
Genome browser
AA seq
1748 aa
AA seq
DB search
MKKSNPPNPAFRRPPPPHLPRDPHAHQYCRPVQSAYHNHRPNFPANHGLNRPPGPAGRTR
GPKFVVQLRCNGGVHGRTDVNSVIAQCVPSPADTRVLDIGPVAGELFFSSCTDGLEATVN
LWGLRFDGAHGFEPRLVAPSGYRELEDRLRALFADRVRRLIDGEEVKVWGKKHQLVWDEI
RNVTWSLSRRNQLVSFSQLLDRKKGLIAEGDLISKRLGEFRSAMNCVLAHLEGKNGEEGS
GGSSQKIEESGEEDVQIFSFGEGFDWNRVYSLVSRERRRLEDGLPIYAYRKEILRQIHCQ
QIMVLIGETGSGKSTQLVQFLADSGIAANESIVCTQPRKIAAISLADRVKEESIGCYQNK
SIICCRTSSSLSQLDSGVIFMTDHCLLQLYMNDANLSGISCIIVDEAHERSLNTDLLLAL
IKSLLCRRPDLRLIIMSATADANQLSEYFFGCGIFYVEGRSFPVAVRYVPCMTEGTSGSG
FFASYVPEVVRMATEVHETEKDGTILAFLTSQMEVEWACENFNTPYAVALALHGKLSYEE
QICVFQSFPGKRKVIFATNIAETSLTIPGVKYVIDSGMVKEGKFEPGSGMNVLKVCKISK
SSANQRTGRAGRTEPGRCYRLYSVSDYESMPPNQEPEIRRVHLGVAVLRILALGIKNVQD
FDFVDAPSAKAIDMAIRNLVQLGAVTWNKDALQLTGEGRYLVKLGIEPRLGKLILGCKEH
RLFREGIVLAAVMANASSIFCRVGNDEDKQKSDCLKVQFCHPGGDLFTLLSVYKEWESVP
PDRKGKWCWENSINAKSMRRCQDTVRELEFCLKHELNAIIPSHWYWDPHKSTEYDKYMKQ
VILSSLQENVAMYSGYDKLGYEVALTGHHVQLHPSSSLLIFSQKPRWVVFGELLSISNEY
LVCVTGVDIESLSTLYPPPLFDVSEMDSRKLQVRVLTGLGSTLLKRFCGKFSSNLLGLVS
RLRTNFMDERIGIEVNVNLNEIRLLSPSQCMEKVFIFVNGVLEYERKLLLNECMEKCLYH
GTGVSSSIALFGAGAEIKHLELEKRYLTVDVYYSNVDAISDKELIMFLEKFASGSICAIH
KFTGIGQDSDDKGKWGRITFLTPDAAKKAAELNNVEFNGSLVKVVPSQTSFGGDSFPAVK
AKVCWPRRPSNGFAIVKCEAHDVGFMLRDFYNLAIGGKFVRCKASNKSSDGVVISGIDKE
ISEAEIFEILRSATNRRILDLFLVRGDAVENPPCSACEEALLKEISPFMPKRNPYTNCCR
VQVLPPEQKDTFMKAFISFDGRLHLEAAKALEQLEGKVLPCCSSWQKIKCQQLFHSSLSC
PGPVYVVIKKQLDPLLESFRDLKGAECTLDRIANGSFRVKISANATKTVAELRRPVEELM
RGKTMDHASLTPTIIQHLFSRDGISLKKSVQQETGTFIIFDRHSLNVRVFGSPDKVELAQ
KKLVECLLTLHESKQLEIHLRGGVLPPNLMKEVVRKFGPDLHGLKAKVPGADFTLITRRH
VISVHGSEELKQKAEGIIYEIAQMPYGSAEGFDSETACPICLCDVEDGYRLERCGHLCCR
LCLVEQCEFAIKNNDSFPICCARESCRAPILVTDLRSLLTNDKLGELFRASVGAFVALSG
GVYRFCPSPDCPSVYRVADPGTAGEPFFCGACYAETCTRCHLECHPYMSCERYQEFKDDP
DSSLKEWCKGKENVKNCPVCGYTIEKVDGCNHVECRCGRHICWVCLEFFQSSNDCYDHLR
ILHPPEVF
NT seq
5247 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaagcaaccctcccaatcccgccttccggcgacccccaccgcctcacttaccg
cgtgatccccacgcccatcaatattgccggcctgtgcagtccgcctatcacaaccaccgt
cccaattttccggcgaaccatggactcaaccggcctcccggccccgccgggcgaacccga
ggcccaaaattcgtggtgcagctccgctgcaacggtggcgtacacggaagaaccgatgtg
aactccgtgatcgcccaatgcgtgccttcgccggcggataccagagtcttagacatcggt
cccgtcgccggagaattgttcttctctagttgtaccgacggtttggaagcgactgtcaat
ctctggggcttgcgcttcgacggcgctcacggtttcgagccgaggctcgtagccccgtcc
ggttaccgcgaactcgaggaccggctccgagccttgttcgctgatcgcgtgcgtcgcctg
atcgacggcgaggaagtgaaggtgtggggcaagaagcaccagcttgtctgggatgagatt
agaaacgtcacgtggtcgctctctcggcggaaccagctcgtctcgttctcccagctcctc
gaccggaagaagggcctgattgctgagggggacttgatttcgaaacgcttgggagagttc
aggtcggccatgaactgtgtactggctcacttggaaggaaagaatggtgaggaggggagt
ggcggttcctcccaaaaaatagaggagagtggtgaagaggacgtgcaaatttttagtttt
ggtgagggtttcgattggaatcgggtttacagcttggtttcgagggagcgtcgacggctg
gaggatgggttgccgatttatgcttacaggaaggagattcttcggcaaattcattgccag
cagataatggtattgattggagagactggttctggaaagagtacgcaattggttcaattt
cttgctgattcaggaattgctgctaatgagtccattgtatgtactcagccccgcaagata
gctgccatctcattggcagatagggtcaaagaagaaagtatcgggtgttatcaaaacaaa
tcaatcatctgctgtcggacatcttcatccctttcacaacttgattctggggtaatattt
atgactgaccactgcttactgcagctctacatgaatgatgccaatctatctgggatatca
tgcatcatagttgatgaggcccatgagaggagcttgaacactgatctccttctggcattg
atcaagagtttattgtgtcggagacctgatttacggcttattataatgtctgccactgct
gatgcaaaccagctctcagagtatttttttggttgtggaattttttatgtggagggaaga
agctttccagttgctgtcagatatgtcccttgcatgacggaaggaacttctggctctggt
tttttcgcttcatatgttcctgaggtggtgaggatggcaaccgaagttcacgaaacagag
aaagatgggacaattcttgcctttttaacttctcagatggaagtagaatgggcttgtgaa
aatttcaatacaccgtatgcagttgcattagctttacacggaaaactttcttatgaagag
caaatttgtgttttccaaagctttcctggtaaaagaaaagttatatttgcaacaaatatt
gcggagacatcgctgacaattcctggggtcaagtacgtaattgattctggtatggttaaa
gaaggcaaatttgaacctggcagtggcatgaacgtcctcaaggtttgcaagatcagcaag
agttccgctaatcaacgaactgggcgtgctggaaggacagaaccaggaaggtgttataga
ctctactcagtatctgattatgaatctatgcctcctaaccaggaacccgagattcgtaga
gttcatcttggagttgcggttcttaggatccttgctttaggcatcaagaatgtacaggac
tttgattttgttgatgcaccaagtgctaaagctattgacatggccatcagaaatctagtt
cagttaggagctgttacatggaataaggatgctcttcaattaactggtgaaggtaggtat
ttggttaaattgggtattgagcctcggcttggtaagctgattctaggctgcaaagagcat
cgtttgtttcgagagggaattgttcttgctgctgtaatggcaaatgccagtagcatattt
tgtagagttggtaatgatgaagacaaacagaaatctgattgccttaaggtgcaattttgt
catcccggtggcgacctatttactcttctctctgtttacaaggaatgggagtctgtgcct
ccagataggaaaggtaagtggtgttgggaaaacagtatcaatgccaaatctatgcggaga
tgtcaagacacagtcagggaattagaattttgcctcaaacatgaacttaatgctatcatt
ccgagtcactggtattgggatcctcataagtctactgagtatgataaatatatgaaacag
gttatactctcttcccttcaagaaaatgtagccatgtactctggatatgataaacttggt
tatgaagtggcactaactggacatcatgtccagctgcatccttcaagttcattgctgata
ttcagtcagaagcctaggtgggtagtttttggtgaactcttgtcaatttctaatgaatat
ctggtctgtgtaactggtgttgatatagaatctttgtctaccctttatcctccccctctg
tttgatgtatctgagatggacagccgaaagttgcaggtgagggtgttgactggtttaggt
agtactctccttaaaagattttgtggaaagttcagcagtaatctgcttggtcttgtatca
cgtttacggaccaacttcatggatgaacgtattggcattgaagtcaatgttaacctgaat
gagattcggttactttccccttcacagtgcatggaaaaggtttttatttttgtaaatggt
gtgttggagtatgagcgtaagttattacttaacgaatgcatggagaagtgcttatatcat
ggaactggtgtttcatcttctatagcactgtttggagctggtgctgagatcaagcatttg
gagcttgaaaagagatatttgaccgttgatgtctattattcaaatgtggatgccatttct
gataaggagcttataatgtttcttgagaagtttgcttctggtagtatctgtgctatccac
aagtttacaggcattggacaggacagtgatgacaaagggaagtggggcaggataacattt
cttactcctgatgccgctaaaaaggctgctgaactaaataatgttgaattcaatggctcc
ttagtaaaggtagttccttcacagacatcatttggaggggactcatttcctgctgttaaa
gctaaagtttgttggccgcgtaggcccagtaatgggtttgcaattgtaaaatgtgaggct
catgatgttgggttcatgcttagagatttctataatctggcgataggaggaaagtttgtt
cgctgtaaagctagcaacaaatcttctgatggtgttgtgataagcggaattgataaagaa
atctctgaagccgaaatttttgaaattttgaggtctgctacaaataggagaatcctggat
cttttcctggtgcgaggagatgctgtagaaaatccgccatgcagtgcttgtgaagaagca
ctcctaaaagaaatctctccctttatgcctaaaaggaacccctacactaattgttgccga
gtccaggtccttccaccagaacaaaaggatactttcatgaaagcttttatctcttttgat
ggaagattgcacttggaggcggcaaaagctttagagcaactggaagggaaagtattgcct
tgttgttcttcatggcagaagataaagtgccagcaattatttcatagctcgttgtcatgt
cctgggcccgtctatgttgtgatcaagaagcaactggatcctttacttgaaagcttcagg
gatttaaaaggtgcagagtgcactctagacaggattgctaatggttcctttcgagtgaag
atatctgcaaatgctacaaaaactgtggcagagctgagaagacctgtggaagagcttatg
agagggaagaccatggatcatgccagcctcacccctaccattatacagcatctattttcc
agagatggcatcagtcttaagaagtcggtgcaacaagagacaggaaccttcattatcttt
gacaggcatagccttaatgtacgggtatttggttctccagacaaggttgagttggcacag
aagaaattggttgaatgccttttgacccttcacgaaagcaagcaacttgaaatccatctc
cgaggtggtgttctgcctcctaacctaatgaaggaagtggtgcgtaaatttgggccagac
ctccatgggctcaaagcgaaggtacctggggctgactttactctcattactcgtcggcat
gtgatctctgttcatggtagtgaagagttaaagcaaaaagcagaagggattatttatgag
attgcacagatgccatatgggtcggctgaagggtttgacagtgaaactgcttgccccatt
tgcttgtgtgacgtcgaggatggttaccggcttgagcgctgcgggcatttgtgctgtcgg
ttgtgtctggtggagcagtgtgagtttgcaatcaagaacaatgacagttttcctatatgc
tgtgcccgcgagagctgccgggctcctattttggttacagatttgaggtctctcttgaca
aatgataagttgggggaactcttcagggcttctgtgggagcatttgttgcattgagtggg
ggtgtttacaggttttgcccatctcccgactgtccttcagtttaccgagtggcagatcct
gggactgctggtgagccatttttctgcggggcatgttatgcagagacttgtactaggtgc
catttagagtgtcatccttacatgtcatgcgagcggtaccaggagttcaaggacgatcca
gattcgtctctcaaggaatggtgcaagggcaaagaaaatgtgaagaactgccctgtatgt
gggtatacaattgagaaggttgatgggtgcaaccacgttgagtgtaggtgtgggaggcac
atctgctgggtatgtttggagttctttcaaagcagtaatgattgctatgaccacttgagg
attctacacccgcccgaagttttttag
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integrated database retrieval system
