Corylus avellana (European hazelnut): 132165585
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Entry
132165585 CDS
T09426
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03030
DNA replication
cave03420
Nucleotide excision repair
cave03430
Mismatch repair
cave03440
Homologous recombination
cave03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
132165585
03420 Nucleotide excision repair
132165585
03430 Mismatch repair
132165585
03440 Homologous recombination
132165585
03460 Fanconi anemia pathway
132165585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cave03000
]
132165585
03032 DNA replication proteins [BR:
cave03032
]
132165585
03400 DNA repair and recombination proteins [BR:
cave03400
]
132165585
Transcription factors [BR:
cave03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
132165585
DNA replication proteins [BR:
cave03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
132165585
DNA repair and recombination proteins [BR:
cave03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
132165585
MMR (mismatch excision repair)
132165585
DSBR (double strand breaks repair)
HR (homologous recombination)
132165585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
132165585
NCBI-ProteinID:
XP_059432195
LinkDB
All DBs
Position
ca11:complement(21523806..21527283)
Genome browser
AA seq
624 aa
AA seq
DB search
MAVNLTPNAIAAIESGDVNAKPLVQVLDIKLIGSTQERYRLLLSDAISTQHAMLATQLND
RVKSGRVRKGSVVQLIEYICSPVQNRKIIVVLNMETIIPDCEIIGNPKSLVESDSAAQKP
LINSNLGQSATVSNNNFSVQKPGHNMQNFPPTVQPPYQPPPKYRSHGPILKNDAPARIIP
IAALNPYQGRWAIKARVTAKGDIRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVLDRF
YDAIELGKVYMISKGSLKPAQKNYNHLKNEWEIFLEATSTVELCPDEDGSIPRQQFSFRP
ISEIENSENNSILDVIGVVMSVNPSVPILRKNGMETQRRILNLKDGSGRSVELTLWGEFC
NREGQKLEEMINSGVFPVLAVKSGKVNDFSGKSIGTISVTQLLINPDLPEAHGLRNWFDG
GGKTASSVSISREIIPGGSKNEIRKTVSQIKDDGFGRSDKPDWVTVKATISFIKTDTFCY
TACPLMIGDRQCNKKVTRSGNANWQCDRCNQEFEECDYRYLLQAQIQDHTGLTWVTAFQE
SGEEILGCSAKELYSLKYEEQDDGRFGGIIQSRLFNQYLFRLKIKEEMYGDEQRVKITVV
KADNVNHSSEATYMLDLISKFTRQ
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgaacctgacgccgaacgcgatcgcggcaatagagtccggcgacgtgaacgcg
aagccgctggtgcaggtgctggacatcaagctgattgggagcacgcaggagcggtaccgg
ttgctcctctccgacgccatttcgactcagcacgctatgctggcgactcagctcaacgac
cgggtcaagtccggtcgggtccggaaaggctccgtcgtccagttgatcgagtacatttgc
agccccgtccagaaccgcaagataattgttgtgctgaacatggaaactataatcccagac
tgtgagataattgggaatccgaagtcactggttgaatctgattccgcagctcaaaaacca
ttgattaatagcaatttggggcagtcagcaacggttagcaataacaatttcagtgtccag
aaaccaggtcataacatgcaaaatttccctccaactgttcaacctccataccaaccacct
ccaaagtacagaagtcacggtccaattttgaagaatgatgcaccggcacggataattcct
attgctgctttgaatccttatcagggacgatgggctatcaaggcaagagttactgcaaaa
ggcgatatccgtcgctacaacaacgcccggggagatgggaaggtgttctcttttgacctc
ctcgactctgatggtggagaaatacgtgtcacttgtttcaatgccgttcttgaccgcttc
tatgatgctattgagcttggtaaagtttatatgatctcaaagggtagcttaaaacctgct
cagaagaactataaccatctgaagaatgaatgggagatatttctggaggcaacttcaacg
gtggagctttgcccagatgaagatggttctataccaaggcagcaattctccttcaggcct
atcagtgaaattgagaattctgaaaacaattccatacttgatgttattggtgttgtcatg
tctgtgaacccttcagtgcccattttgagaaagaatgggatggaaactcagagaagaatc
ctgaatctgaaggatggatctggcaggagtgttgagctaaccctttggggggaattctgc
aacagggaaggtcaaaagctggaagaaatgatcaactctggggtttttccagttttagct
gtcaaatctgggaaggttaatgacttcagtgggaaatcaatagggacgatttctgtgaca
cagcttctcataaatcctgatctgcctgaggcccatggtttgagaaactggtttgatgga
ggtggaaaaactgcttcgtctgtatcaatttctagagaaattatcccaggaggatctaag
aatgagatacgtaaaacagtgtctcagatcaaggatgatggttttggaagatcagataag
ccagattgggtaacagtgaaggcaaccatatctttcattaagacagatactttctgttac
acagcctgcccattgatgattggagatagacagtgtaataagaaagtgacaaggtcagga
aacgcaaattggcaatgtgacaggtgcaatcaagagtttgaggagtgtgactatagatac
cttcttcaagcccaaattcaagaccatacaggattgacttgggtgactgctttccaggaa
tctggggaagagatcttaggttgctcggccaaggagttgtattcgttgaagtatgaagag
caggacgatggtaggtttggaggaataatccagagcagactcttcaaccagtatcttttc
cgtcttaaaatcaaagaggaaatgtatggtgatgaacaaagggtgaagatcactgtagtt
aaggccgataatgtgaaccattcttcagaggccacatacatgcttgatctgatttcaaag
tttactaggcaataa
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