Corylus avellana (European hazelnut): 132165668
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Entry
132165668 CDS
T09426
Name
(RefSeq) protein CHROMATIN REMODELING 8
KO
K10841
DNA excision repair protein ERCC-6
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
132165668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cave03036
]
132165668
03400 DNA repair and recombination proteins [BR:
cave03400
]
132165668
Chromosome and associated proteins [BR:
cave03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
132165668
DNA repair and recombination proteins [BR:
cave03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
132165668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
Motif
Other DBs
NCBI-GeneID:
132165668
NCBI-ProteinID:
XP_059432305
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Position
ca11:complement(1384260..1391161)
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AA seq
1264 aa
AA seq
DB search
MAEDEDRVLLSSLGITSANPEDIERDILAEVIRNDENGSEGGGSTEEEPLEKSESIDPSS
TSQAKLFHKLKVVEFEIDAVASTVGQVRNVASDGNDRGELGNQEDGGQVSPNGLNLQHAL
AADRLRSLKKTKAQLDKELSDLRKGNSSKAVEHDKVLRNLVKEEPKRKRKLKEVQKSRKN
VEKRQKIVSFEEDTGFDALLDAASSGFVETERDEFIRKGILTPFHKLKGFERRLQQPGSF
NRLDVPENEDETNNLVAASVARAVRSMSEAAQARPTTKLLDPEALPKLDAPTRPFQRLKT
PLKLPQSAKRELEKNDDSKRKKKNKRPLPNRKWTKLISCEEKHLEESEDARDEVVSSSCE
DVKPEGVKDVDDYEPPYVTLEGGLKIPESIFCALFDYQKVGVQWLWELHCQRAGGIMGDE
MGLGKTIQVLSFLGALHFSNMYKPSIIVCPVTLLRQWRREARKWYPSFHVVILHDSAQDP
INRKKQAKSYDSDYESEASFDSEYEGDISSRSNGKWDSLINRVLRSESGLLITTYEQLRI
LGEKLLDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTIHRIIMTGAPIQNKLAELWSLFD
FVFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADV
NAHLPKKTEHVLFCSLTAEQRSVYRAFLASTEVEQILDGNRNSLYGIDVMRKICNHPDLL
EREHSCHNPDYGNPERSGKMKVVDQVLKVWKEQGHRVLLFTQTQQMLDILEKFLITAGYC
YRRMDGLTPVKQRMALMDEFNNSNDVFIFILTTKVGGLGTNLTGADRVIIYDPDWNPSTD
MQARERAWRIGQKRDVTVYRLITSGAIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDM
KDLFVLNDNRENGSTETSNIFGQLSEDVNVVGAQKDKQDKQKPLEVPARHTDGVAAENDN
KSGIATSSGKGKEKADHSDGDVDEETGILRSLFGAHGIHSAMNHDVIMNAHDGEKMRLEE
QASQVAQRAAEALRQSRMLRSRDSISVPTWTGKSGTAGAPLSMRQKFGSTVNSQLTNNTK
SVNDLSSSGTNSISGIAAGASAGKALSSGELLARIRSTQERAVGAGLEQQLASSSHNDVP
RGGATLHGSEVYPTGMGTRSDPALENSSSSKKSSRNKARSADVGPSRPSKNKARVQPEVL
IRQICTFMQQRGGRTTSASIVQHFKERIPAEDLPLFKNLLKEIATLAKDLNESHWVLKPE
YLQK
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagacgaggatagagttctgcttagtagtttgggtataacctccgcgaatcct
gaggatatcgagcgtgacattctagcagaggtaataaggaatgatgagaatggtagcgaa
ggtggagggagcacggaggaggaacctctcgagaagtcggaaagtattgacccatcatcc
acgagccaagcaaaactcttccataaattgaaggtagtagagtttgaaatagatgccgtt
gcctccactgttgggcaggtgaggaatgttgcaagtgatggtaatgacagaggggagctt
ggaaatcaagaggatggtggtcaagtttcccctaatggcttaaatcttcagcatgccttg
gctgctgatcggcttcgaagcctcaagaaaaccaaggctcaacttgacaaagaactttca
gatttgcgcaagggtaactcttccaaagctgttgaacatgacaaggtgttacgaaatctg
gtcaaggaagagccaaaacgcaagaggaagttaaaagaggttcagaaatcgaggaaaaat
gtggaaaagagacagaaaatagtctcatttgaggaggatactggttttgatgcacttttg
gatgcagcatcttcaggctttgttgaaacagaaagggatgaattcattcggaaaggaatt
ttaactccttttcataagctgaagggttttgagcgccgtcttcaacaaccagggtcattt
aataggctcgatgtacctgagaatgaagatgagactaataatcttgttgctgcaagtgtt
gccagagctgtacggtcaatgtcagaggctgctcaagctcgcccaacaaccaaactcctt
gatccagaagctttgccaaagcttgatgcacctactcgtccttttcaaaggctgaaaaca
cctttaaaacttcctcaatccgcaaaacgagagctagaaaagaatgatgattcaaaaagg
aaaaagaaaaacaaacggcctttgcctaacaggaagtggacaaagctcatttcttgtgag
gaaaagcacttggaagaaagtgaggatgcaagggatgaagtagtaagctccagttgtgaa
gatgtgaagccagagggtgttaaagacgtggatgattatgaacctccttatgtaacactt
gaaggtgggctgaaaataccagaaagcatcttttgcgcactttttgactatcaaaaagtg
ggagtacagtggttgtgggaattgcattgccaaagagcaggtgggattatgggagatgag
atgggtcttggtaagactatccaagtcttatcttttcttggtgcactgcatttcagtaat
atgtacaaaccgagcattattgtctgccctgttacactcttgcgacagtggagaagggaa
gcacgaaaatggtacccaagctttcatgtggtgatactacatgattctgctcaggatcct
attaataggaagaagcaagccaaatcttatgatagtgattatgaaagcgaagcttcattt
gacagtgaatatgagggagacatctcgtctaggagcaatggaaaatgggattccttgata
aaccgtgttttgagatcagaatctgggttgcttatcaccacttatgagcaactgcgcata
ttaggtgaaaaattgcttgatattgaatggggttatgcagttttggatgaaggacaccga
attcggaatccgaatgctgagattactctagtttgcaagcagctacagacaattcatcga
ataataatgactggtgctccaattcagaacaagctggctgaactgtggtctttatttgat
tttgttttccctgggaagctgggtgtcttgcctgtatttgaggcagagtttgcagtcccc
atatctgttggtggttatgctaatgcttcaccattgcaagtatccacagcttacaggtgt
gctgtggtcctgcgtgacttaatcatgccttatctcctacgacgtatgaaggctgatgtg
aatgcccaccttccaaagaagaccgaacatgtcctcttttgcagcctcactgcagagcaa
cgatctgtgtatagagcttttctagctagcactgaggtagaacagattttagatggcaat
agaaattctctttacggaattgatgtgatgcgtaagatttgcaatcaccctgatctgctt
gagagggagcattcctgccacaatccagactatgggaatccagaacgcagtggaaaaatg
aaagtagttgaccaagtgcttaaggtttggaaggaacaaggtcatcgtgttcttcttttt
acacaaactcaacaaatgcttgatattcttgagaagtttttgattaccgctggctactgc
tacaggagaatggatggtcttactcccgtaaaacaaagaatggccttaatggatgaattt
aataactcaaatgatgtctttatcttcattttaacgaccaaggttggtggtttgggaaca
aatctaactggtgcagaccgggtgatcatctacgatcctgactggaacccttcaactgac
atgcaggccagggagcgtgcttggcgtattggtcagaaacgggacgtaacagtgtataga
ttgatcacaagtggagcgatagaggagaaggtgtaccaccggcagatttacaaacatttt
ctcactaataagattttgaagaacccacagcagagaaggttctttaaagctcgggatatg
aaggatcttttcgtcctgaatgacaacagagagaatgggtcaactgaaacatctaatatt
ttcggtcaactttctgaagatgtaaacgttgttggggctcagaaagataaacaggataag
caaaaacctcttgaagttcctgcacgacatactgatggtgttgcagctgaaaatgataac
aaatcagggattgcaacttcgagcgggaaagggaaagaaaaagctgatcacagtgatggt
gatgtagatgaagaaacaggcattttaaggagtctttttggtgcccatgggatacatagt
gccatgaaccatgatgtaatcatgaacgcccatgatggggagaagatgaggcttgaggag
caagcttcccaagttgcacaaagagcagcagaagcattgcgccagtcacggatgctccgt
agtcgtgacagtatttctgtcccaacatggaccgggaaatccgggactgctggtgcacca
ttatctatgcgtcagaagttcggttcaactgtgaactctcagttgacaaataataccaaa
tcggtcaatgacttgtccagcagtggaaccaacagtataagtggaattgcagctggggca
tccgcagggaaggcactatcttcaggcgaactattagctagaatacgaagtacccaagaa
agagctgttggtgctggacttgaacaacagttggcttcaagttctcataacgatgttccg
cgtggaggggccactctgcatggatccgaggtttatccgacagggatgggtacacgaagt
gatcctgccttggagaattcctcatcatcaaaaaaaagttctcgtaacaaggcaagatcc
gctgatgttgggccttctagaccatcaaagaacaaagctagagtgcagccggaagttttg
atacgccagatctgtacatttatgcaacaaagaggtggaagaaccacttcagccagcata
gtgcagcacttcaaagagaggatacccgccgaggatctacccttgtttaagaatcttttg
aaggaaatagcaacactagcgaaagacctgaatgaatcgcattgggttctaaaaccagag
tatctacagaaataa
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