Corylus avellana (European hazelnut): 132166323
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Entry
132166323 CDS
T09426
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03013
Nucleocytoplasmic transport
cave03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132166323
03015 mRNA surveillance pathway
132166323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132166323
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132166323
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
132166323
NCBI-ProteinID:
XP_059433108
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Position
ca11:4607500..4617086
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AA seq
414 aa
AA seq
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MAKPSRGRRSPPSGSASSSRSRSYTGSDSRSSSRSRSVSRSLSRSRSRSRSFSSSSSPSR
SVSSRSPSPPPLRKSPAEVARRGRSPPPQSKRISPPPRKASPIQESLVLHVDKLSRNVNE
GHLKEIFGFFGEVVNVELAMDRNVNLPKGYGYVEFKARVDAEKAQLCMDGGQIDGNVIQA
RFTLPPRQKVSPPLKALANASKRDAPKIDSVGADGEKDGLKRPREASPRRKPPASPRRRS
PVGQRGGSPRRLPDSPVRRRADSPVRRRVESPYRRGDTPPRRRPTSPGRGPSPLRRNRSP
ARRMRGSPLRRRSPLPPRRRTPPRRARSPPRRSPIGRRRSRSPIRRPARSRSLSVSPRRG
RGPVARRGRSSSYSKSPSPRKVARRSSRSPRRPLRGRSSSNSSRSSSPLPPRKP
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccaagccgaggccgtcggtcgccgccgtcggggtccgcgtcgtcgtctcgc
tcccggtcctacacgggctcagactcccgttccagctctcgctcacgctccgtctctcgg
tcgctctcgcgttccagatctcggtcgaggtccttctcctcgtcttcctctccgtcccgg
agcgtcagttctcgcagcccgagtccccctcccttgaggaagagtcctgctgaggtagct
agaagaggtcgctctccaccaccacaatcaaaaaggatttctccacccccaaggaaagct
tctcctattcaagagtcgcttgttcttcatgttgacaaactcagcaggaatgttaatgaa
ggccatttaaaagaaatatttggtttctttggcgaagttgttaatgtggagctggcaatg
gatcgcaatgtcaatcttccgaaaggatatggatatgtggagttcaaggcaagagtggat
gctgaaaaggcccaattatgcatggatggaggtcaaattgatgggaatgttattcaagca
aggttcacattgcctccacgacagaaggtgtcaccacccctaaaagcccttgccaatgct
tcgaagagagatgctcccaaaattgatagcgttggtgctgatggtgagaaggatggactc
aagcggccgagggaagcttctccccgtcggaagcctcctgcctcaccaagaaggagatcc
cctgttggtcaaaggggtggatctcctagacgactgccagattctcctgtgcgtcgtcgt
gcagattctcctgtgcgtcgtcgagtagaatcaccttatcgacgtggtgatacacctccg
aggaggaggcccacatctcctggcagaggtccatctccactaaggcgcaatagatcccct
gcaagaaggatgcgtggcagtcctcttcgcagacgatccccacttcctccaaggcgccgt
acacctccaagacgggctcgtagtcctcctagaaggtctcctattggtcgtagacgtagt
cgatctcctattcgtaggcctgctcgctcacgttcactatcagtgtccccacggagaggt
cgaggaccagtcgcaagacgtgggaggtcatcatcctactctaaatcacctagtccacgc
aaggtagcccggagatcgagtcgtagtccaagaaggcctttgagaggaagaagcagtagc
aacagcagccgcagtagttcgccactgccacctcgtaagccatag
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