Corylus avellana (European hazelnut): 132166329
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Entry
132166329 CDS
T09426
Name
(RefSeq) DNA mismatch repair protein MSH7
KO
K08737
DNA mismatch repair protein MSH6
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
132166329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cave03400
]
132166329
DNA repair and recombination proteins [BR:
cave03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
132166329
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
132166329
NCBI-ProteinID:
XP_059433115
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Position
ca11:complement(18431320..18442600)
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AA seq
1098 aa
AA seq
DB search
MQRQKSILSFFQKPASAENVHGSRRVPQFTVKKDKHNGAASNQATSDNMMDSSLEIRGTE
TPPEKVPRQVFPATFQENENNGGSSLFSSIMHKFVKIDDREKSTERNPAPGGSANVCTIS
GRYSELEGLPKQDVAAQHCRKGDVVNSNGIVDQGYGVQIEIDDDIPGPETPGMRPVVPRL
KRLQEDSPKSGVKDDSSLFDSSKRLKLLQDTTALSKNHLKLSDTMSKFEWLDPARIKDAN
GRRPSNPLYDKKTLYIPPDTLKKMSASQKQYWSVKCQYMDVVLFFKVGKFYELYELDAEI
GHKELDWKMTLSGVGKCRQVGISESGIDDAVQKLVARGYKVGRIEQLETSDQAKARGANS
VISRKLVQVVTPSTASDGNIGPDAVHLLAIKEGNCDLDNGSVVYGFAFVDCAALRIWVGS
ISDDASCAALGALLVQVSPKEVIYESKGLSKEAHKALRKYSLTGPSMLQLSPVQSLTDFQ
NASEVRNLVRLKGYFKGSSNLWNHVLDSVIHHDVALCSLGGLIDHLSRLMLDDVLRNGDI
LPYQVYQGCLKMDGQTLVNLEIFSNNADGGQSGTLYKYLDQCVTPCGKRLLRNWICHPLK
DIEGINNRLNVIEDLMANSEIMLLFAQYLRKLPDLERLLGRIKASVQSSASLLLPLVGKK
VLKQRVKAFGSLVKGLRIGLDFLMLLQNEGRIISSLSKVFRLPRLIGNDGLDQFLTQFEA
AVDSDFPNYQNHNVTDSDAETLSILIELFIEKPTEWFEVIYAINCIDVLRSFAVIAGCSC
GAMSRPVILPQSENITGGQEIRGPILQVKGLWHPFAFGENGGVPVPNDMILGENTDGHHA
RTLLLTGPNMGGKSTLLRSTCLAVILAQLGCYVPCEMCVFSLVDTIFTRLGATDRIMTGE
STFFVECTETASILQNATQNSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFAT
HYHPLTKEFASHPHVTLQHMACAFQSKSECHSKGEQELVFLYRLASGACPESYGLQVAIM
AGIPERVVEAASKARQVMKRSLGKSFRSSEQRSEFSTLHEQWLNMLMAVSKSENRNFDDT
DDFDTLFCLWHELKSSYT
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgccaaaaatctattctctccttttttcaaaaacccgccagtgccgaaaatgtg
cacggcagccggcgagttccgcagtttacggtgaagaaagataaacataacggcgccgcg
tccaatcaagctacgagtgataatatgatggactcgtctcttgaaatcagaggaaccgaa
acaccgccggagaaggtgccacgtcaggtttttccggcgacgttccaggaaaatgaaaac
aacggaggttcttcgctgttctcgagtattatgcataagtttgtgaagattgatgataga
gaaaagtctactgagaggaatccggctcctggtggttctgctaatgtttgtacgatttct
ggtagatatagtgagctggaaggattgcccaaacaagatgtggctgcccaacattgcaga
aagggtgatgttgtcaattctaatgggatcgttgatcaaggatatggcgtgcagattgaa
attgatgatgacattccagggccagaaacacctggtatgcgacctgttgttcctcgattg
aagcgattgcaagaagatagtccaaagtctggggtcaaggatgacagttccttattcgat
tcaagcaaaaggctgaaactacttcaggatactacagccttgagcaagaatcacttaaag
ttatctgatacaatgagcaagtttgagtggcttgaccctgctcgaatcaaggatgctaat
gggcgaaggcctagcaatcctctttacgacaagaagacgctgtatataccgccagacaca
ttgaagaaaatgtcagcatctcagaaacaatattggagtgtcaaatgtcaatatatggat
gttgtgcttttctttaaagtgggaaagttttatgagctttatgaactagatgctgaaatt
ggccataaggagcttgattggaaaatgacattaagcggtgtggggaaatgtcggcaggtt
ggtatatctgaaagtgggattgatgatgctgttcaaaagcttgttgctcgtggatataaa
gttggacgaattgaacagttggagacatctgatcaagcaaaagccagaggtgcaaattct
gtaatttcaagaaaattggttcaggtagtcaccccatcaaccgcaagcgatggtaatatt
gggcctgatgctgttcatcttcttgcaataaaagaggggaattgtgacctggataatggt
tcagttgtgtatggctttgcttttgttgactgtgctgctttaagaatttgggttggttcc
atcagtgatgatgcatcctgtgctgctctgggggctttactggtgcaagtttcgccgaaa
gaagttatatatgagagtaaagggttgtccaaagaagctcataaagcactcagaaagtat
tcattaacaggtccttcgatgctgcaattaagtccagttcagtcacttacagatttccag
aatgcttctgaagttagaaatttggtgcgcttgaagggttactttaaaggatcttctaat
ttgtggaatcatgtacttgatagtgtgatccatcatgatgttgccttatgttctcttggt
ggacttattgatcatctatcgaggttgatgttagatgatgttttacggaatggagatata
ttgccgtatcaagtttatcagggttgcctcaaaatggatggacagaccctggttaatctt
gagatattcagtaataatgctgatggtggtcaatctggtacattgtacaaatatcttgat
caatgtgtgacaccatgtggtaagcggcttttaaggaattggatctgccatccactaaaa
gatattgaaggcataaataataggcttaatgtcattgaagatctaatggcaaattcagaa
attatgttgctttttgctcaatatcttcgcaagcttccagacttagaaaggctgcttgga
cggattaaggctagcgttcagtcatcagcttctctgttactgcccttggttggcaaaaaa
gtattgaaacagcgagttaaagcgtttggctctcttgtgaaaggcctgcgtattggattg
gatttcttaatgctattacagaatgaagggcgtataatctcatctttatcaaaagttttt
agacttccaaggcttattggtaatgatgggctggatcaattccttacccaatttgaagca
gctgtagatagtgacttcccaaactaccagaatcacaacgtgacagattcagatgctgaa
actctctctattctgattgagttatttattgaaaagcctactgaatggtttgaagtcata
tatgccatcaattgtatcgatgtactaagatcttttgcagtcattgctggttgttcatgt
ggggctatgtccagacctgttattttgcctcaatctgaaaatataactgggggccaagag
atcagaggacccatacttcaagttaaagggctttggcatccatttgcctttggagagaat
ggaggagtgcctgtcccaaatgacatgatccttggtgagaatacagatggccatcatgcc
cgaactttgctactgactggaccgaatatgggcgggaagtcaacactcctgcgttcaact
tgtttagctgtcatactggcccagctgggctgttatgtgccctgcgagatgtgtgttttc
tcactggtggacactatcttcacccggcttggtgctactgaccgaatcatgactggggag
agtaccttcttcgttgagtgcacagaaacagcatccatccttcaaaacgccactcaaaat
tctttggttattcttgacgaattgggtcgaggaacaagcactttcgatggatacgccatt
gcatatgcggtattccggcatttgattgaaaaggttaactgtcgactactatttgctacg
cactaccacccacttactaaggaatttgcttcccatccacatgttacactgcaacacatg
gcctgcgcttttcagtcaaaatctgagtgccattcaaaaggtgagcaggagctggttttc
ctataccggcttgcctctggagcatgcccagagagctatggattgcaagtggcaataatg
gctggaatcccagaaagggtggttgaagctgcatcgaaggctcgccaagtgatgaaaaga
tcacttggcaaaagttttaggtcaagtgaacaaagatcagagttctcgactctccatgaa
cagtggttgaacatgctaatggctgtctctaaaagtgaaaatcgtaattttgacgacacc
gatgattttgatacgcttttttgcttgtggcatgagctaaagagctcctatacatag
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