Corylus avellana (European hazelnut): 132168752
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Entry
132168752 CDS
T09426
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03022
Basal transcription factors
cave03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132168752
09124 Replication and repair
03420 Nucleotide excision repair
132168752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cave03021
]
132168752
03036 Chromosome and associated proteins [BR:
cave03036
]
132168752
03400 DNA repair and recombination proteins [BR:
cave03400
]
132168752
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132168752
Transcription machinery [BR:
cave03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
132168752
Chromosome and associated proteins [BR:
cave03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
132168752
DNA repair and recombination proteins [BR:
cave03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
132168752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
AAA_11
NAMPT_N
SNF2-rel_dom
AAA_19
Motif
Other DBs
NCBI-GeneID:
132168752
NCBI-ProteinID:
XP_059435769
LinkDB
All DBs
Position
ca2:12686193..12692625
Genome browser
AA seq
758 aa
AA seq
DB search
MKFEMEDVTVYFPYDHIYPEQYAYMLELKRSLDAKGHCLLEMPTGTGKTIALLSLITSYV
LSKPHNPVKLLYCTRTVHEMEKTLAELKLLHTYQTTHLGDRAKILAVGLSSRKNLCVNPR
VLAAENRDSVDASCRRLTATWVRAAAAANPNVPTCEFFEEYEKAGSSAVLPPGVYTLQDL
RVYGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQRESVVVFDEAHNID
NVCIEALSVSVRRQTLEGARRNLNKMRQEIEKFKATDAGRLRAEYNRLVEGLAQRGNLPI
SDTWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLEGRLETDNVEKEGPVAFVSS
LNTHAGIDQKTLKFCYDRLHSLMLTLEVTDTDEFLHIQTICDFATLVGTYTRGFSIIIEP
YDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS
FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLVEMASIVPDGIVCFFV
SYSYMDGIVNSWNDNGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAIFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
LRKMAQPYDKAGSSSSKTLLSQEDVEKMSDANLNEMLY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgaaatggaggacgtaacagtctacttcccctacgaccatatatacccagag
caatatgcctacatgctcgaactcaagcgatccctggacgccaagggtcactgccttctt
gaaatgcccacaggcaccggcaagaccatcgccctcctctccctcatcaccagctacgtc
ctctccaagccccacaaccccgtcaagctcctctactgcacccgcaccgtccacgagatg
gagaagaccctcgccgagctcaagctcctccacacttaccagaccacccatctcggcgac
cgcgccaagatcctcgccgtaggcctctcctcccggaaaaacctctgcgtcaacccacga
gttctcgcagccgagaaccgggactccgtcgacgccagctgccggagactcactgccacc
tgggtcagggccgccgccgcggccaacccgaacgtgcccacttgcgagttcttcgaggag
tatgagaaggcggggtccagcgcggtgttgccgccgggagtttatacattgcaggatctg
agggtgtatggaaaggagaaagggtggtgtccatacttcttggcacgacatatggtgcag
tttgcaaatgtggtagtttatagttatcagtatctcctggatcctaaggtggccgggatt
atatccaaggaaatgcagagggagtctgttgtggtgtttgatgaggcacataatattgac
aatgtttgtattgaagctcttagtgttagtgtgagaaggcagacacttgaaggggccaga
aggaatctcaataaaatgcgtcaggagattgagaagttcaaggccacagatgctggtaga
ctgcgtgcagaatacaatcggcttgttgagggtttggcacaaagaggaaacctgcctatc
tcggacacctggctctctaatcctgccttacctgatgatattctgaaggaggctgtgcca
ggaaatattcgccgagcagagcattttctgcatgtcttacgtagattggtccaatatctg
gaggggcggctggaaaccgataatgttgagaaggaggggcctgttgcgtttgtttcatct
cttaatacccatgctggaattgatcaaaaaacattgaaattttgttatgatcgcctacat
tcactgatgttgacactagaagtcaccgatacagatgagtttttacatatccaaacaata
tgtgactttgcaacacttgtggggacgtacactcgtggtttttcaattataattgaacct
tatgatgagagaatgccgcatattcctgaccccgtgcttcagcttagttgccatgatgct
tctcttgccataaagcctgtcttcgatcgatttcagtcagttgtcattacatctggaact
ctgagtccaattgatctctacccccgtcttcttaacttccatccagttgttagtcgaagt
tttaaaatgtccttaacaagagattgcatttgcccaatggttctcactcgtggaagtgat
cagcttccagtcagtaccaaatttgatatgagaagtgatcttggtgttgtaaggaattat
gggaggctcttggtggagatggcatctattgttccagatgggattgtatgcttttttgtc
agttactcatatatggatggaatagtgaatagttggaatgacaacggaattttgaaggaa
ataatgcagcataagcttgtcttcattgagacacaggatgttgtggaaactactttggct
cttgacaactaccgcaaggcttgcgattgcgggaggggtgcgatctttttctctgttgcc
aggggaaaagttgctgaaggtatagactttgatcgacattatggtagactagtcatcatg
tttggtgttcctttccagtacacattgagcaagattttgcttgcccgattggaatatcta
cgggacacctttcagataaaggaaggagattttctgacttttgatgccttgagacaagct
gctcaatgtgtgggccgtgtaatccgatcaaaggctgattatgggatgatgatctttgct
gacaaaaggtatagccgtcatgacaagcgctctaaattgcctgggtggattctgtcgcat
ttacgtgatgcacatctgaatttgagcacggacatggctctgcatatagcacgggagttc
cttaggaagatggctcaaccatatgataaagctggtagcagcagtagcaaaacccttttg
tcccaagaagatgtggagaagatgagtgatgccaacttgaacgaaatgttgtattga
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integrated database retrieval system
