Corylus avellana (European hazelnut): 132168794
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Entry
132168794 CDS
T09426
Name
(RefSeq) endoribonuclease Dicer homolog 2 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cave
Corylus avellana (European hazelnut)
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cave03036
]
132168794
Chromosome and associated proteins [BR:
cave03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
132168794
microRNA pathway
RISC loading complex
132168794
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Helicase_C
Dicer_dimer
DEAD
ResIII
PAZ
dsrm
Cas3-like_C_2
SNF2-rel_dom
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
132168794
NCBI-ProteinID:
XP_059435828
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All DBs
Position
ca2:complement(10901919..10913528)
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AA seq
1397 aa
AA seq
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MEIGESQQLSVDPLPFARSYQLEALEVAIKQNTIVFLDTGSGKTLIAIMLLRSYAYLLRK
PSPFIAIFLVPHVVLVSQQAEAVKMHTDLNVGMYYGDMGVDFWDAAMWKEEIGKHEVLVM
TPAILLAGLKHSFFKLSMIKVLIIDECHHARGKHPYACIMTEFYHRQLGSAGSDLPRIFG
MTASPIKTKSGDSENSYWEKISELETMMNSKVYTCASESVVAEYIPFSTPKFKFYRHTEI
PSTLYERLARDLQGLEEKHVLSLKMLDLEESVADATSKKINKICSALVFCLNELGIWLGL
KAAESFSCNETDICNETDSIPWGKLDVRSQAIVNNFSLDAFHTFATHVPSGPEWSIGDND
KANMDAGLVTSKVVCLIESLLEYRDLKDIRCIVFVERVITAIVLHYLLNELLPKYNSWKS
KYIAGNNSGLQSQTRKKQNEIVEEFRKGMVNIIVATSILEEGLDVQSCNLVIRFDPSSTV
CSFIQSRGRARMQHSDYVLMVNSEDFATRSRLEKYHASGDTMRTASLRHASLPCSPLQSN
LKDEEVYDVESTGASVTLTSSVGLIHFYCSRLPSDRYFKPAPRWDEKTRTLHLPKSCPLQ
NVVVEENINSKIMKQTACLEACKKLHEMGALTDNLVPDVVVEEGTAQECGNERYIYEQPS
YFPPELVGCCPKNSKIMYHRYLIELKQNFGYDVPVHDIMLLMRSELDSDVGSMHFDLDVD
WGSLAVNFKYVGVIHLSPDQVLLCRTFQIALLRVLKDHNLNNLKDLLDGDYPVDNIEIDY
LLLPATGKDGIPLIDWECITSVHFSFEKFWENHLNCSHPKGYARCVHTIDGSVCTCMLQN
SVVYTPHSGHVYCITGILELNGNSLLKLRNGRMVTYKEYNEEQHGIKLRFDDESLLNGRH
MFRVQNYLQRSRKQKEKESGRTTVELPPELCKIIMSPISITTFYSFSFLPSIMHRLESLL
IAVNLKKMHLDHCMQNDVIPTIKVLEAITTKKCQEAFHLESLETLGDSFIKYAVSQQLFK
TYQNQHEGVLSAKKEKIISNAALCKFGCDRKLPGFIRNESFDPKKWIIPGDRSQSYALSE
ELLLSARKIYVRESRKLKIKRVADVVEALIGAYLSIGGETAALLFMDWMGIKVDFHTTPY
ERLFQVHAEKHLNVRDLESLLNYEFHDPSLLLEALTHGSYMLPEIPRCYQRLEFLGDAVL
DYLVTMHFYNKYPGLSPELLTDMRSASTNNDCYARSAVKFELHKHILHTSRELHRHIVET
VNNFEKLSLESTYGWESESTFPKVLGDVIESLAGAILVDSGYNKEKVFQSIRRLLEPLIT
PETVMPHPGKELNELCQTKHYNMKERIKSHNKGMTSITVEVEVNGISFKHTATAAKTKTA
IKIASKEVLKSLKEQTL
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atggaaataggcgaatcccagcaactatctgttgatcctcttccatttgccagaagttat
cagcttgaagcactggaggtggcaatcaagcagaacactatagtgtttttggacactggc
tccggcaagactctgattgcaatcatgcttctgcgcagctacgcctaccttctccgcaag
ccttcacctttcattgcaatcttcttagttccccatgttgtcttggtctctcaacaagcc
gaagctgtgaaaatgcatactgacttgaatgtgggtatgtattacggagatatgggagtt
gacttctgggatgctgctatgtggaaggaagaaataggaaaacatgaggtgcttgtgatg
acacctgcaattttgcttgctggcttgaagcatagttttttcaaactaagcatgataaag
gttttaataattgatgaatgccaccatgccaggggtaagcacccttatgcttgcattatg
acggagttctatcatcgtcagttaggttctgctggatctgatcttcctagaatatttggg
atgactgcttcccccataaagacaaagagtggagactctgaaaactcttactgggaaaag
atttccgaacttgagaccatgatgaattcaaaggtgtatacttgtgctagtgaatctgtg
gttgctgagtatatcccattttcgactccgaagtttaaattctataggcacacggaaatt
ccatctaccttatatgaacgactagctcgtgatttgcagggtttagaagaaaagcatgta
ctctcactgaaaatgcttgatctcgaagaatctgttgcagatgctacaagcaaaaagata
aataagatttgttcagctttagtattctgtttgaatgagcttggtatttggctgggtcta
aaggctgcagagtccttttcttgcaatgaaactgacatatgcaatgaaactgactcaatt
ccatggggaaaactggatgtgcgtagtcaggcaattgttaataatttcagtttggatgca
ttccacacatttgccactcatgttccatcaggtccagagtggtctattggtgataatgat
aaagccaatatggatgcagggcttgtaacttcaaaagttgtttgtctcattgaatctctt
cttgaatacagggatttaaaggatattagatgtatagtctttgtggaaagggtcattaca
gctattgtcttacattatcttttgaacgagttgcttccgaaatacaacagctggaaatct
aaatacattgcgggaaataactctgggttgcaatcccagacaaggaaaaaacagaatgaa
attgtggaagaatttcgtaaaggcatggtgaacatcattgttgcaacatcaattcttgaa
gagggtttagatgttcaaagctgcaacttggtgattagatttgacccatcttccaccgtt
tgtagtttcatacagtccagaggccgtgctagaatgcaacattcagattatgtattaatg
gtgaatagtgaggattttgctactcgatctcgactagagaaatatcatgctagtggagat
actatgagaacggcatccttacgccatgcttcgcttccttgctcacctcttcaaagtaat
ttaaaagatgaggaagtttatgatgttgaaagcacgggagcgtctgtgacactgacttct
agtgttggtttgatacacttctattgctcacggctcccttcagatcgctattttaaaccg
gctccgaggtgggatgagaagactcgcactctacatcttcccaagagctgtcctttacag
aatgttgttgtagaagaaaatattaactctaaaattatgaagcagactgcctgccttgaa
gcatgcaagaaacttcatgagatgggtgctttgacagacaatcttgttccagatgttgta
gtggaagaaggcacggcacaagaatgtgggaatgaacgttatatttatgagcaacccagt
tacttcccacctgaactggtcggttgttgtccaaagaattctaaaataatgtatcatcgc
tacttaatcgagttgaagcagaactttggttatgatgttccagttcatgacatcatgctt
ctcatgagaagtgaactagattctgatgttggaagcatgcattttgacttggacgttgat
tggggtagcttggcagtgaactttaaatatgtaggagtgattcatcttagcccagatcag
gtccttttgtgtagaacgtttcagatagctcttttaagagttcttaaagatcataatttg
aataatttaaaggatcttttggatggagattatccggtagataatattgagattgactat
cttttgcttccagccactggcaaagatgggatacctttgattgattgggagtgtattact
tccgttcacttttcatttgaaaagttttgggaaaatcacttgaattgttctcatccaaag
ggttatgctcgttgtgtacataccatagatggttctgtatgcacatgcatgcttcagaat
tctgtggtctatacccctcacagtggtcatgtgtactgcataactggaattttggaattg
aatggaaactcacttctgaagctaaggaatggcagaatggttacatacaaggagtacaat
gaagagcagcatggcatcaagctgcgttttgatgacgaatcattgcttaatgggagacat
atgtttcgggtgcaaaattaccttcagagaagcagaaaacagaaagagaaagaatcaggt
cgtacaacagttgaattgcctccagaactttgcaaaataatcatgtcaccaatatcaatc
actacattttattcgttctcatttcttccttcgatcatgcatcggcttgagtctttgctt
atagctgtcaatttaaaaaagatgcatttggatcattgcatgcaaaatgacgttattcca
accatcaaggtcttggaagcaattactactaagaaatgccaagaggcattccacttggaa
tccttagaaactcttggagattcttttatcaaatacgctgttagtcaacagctttttaag
acctatcaaaatcaacacgagggtgtccttagtgcgaagaaagaaaaaataatttctaat
gcggctctttgcaagtttggatgtgaccgcaaacttccgggatttattcggaatgagtca
ttcgatcctaaaaagtggataattcctggagacagatctcaaagttatgcattaagtgag
gagttgcttcttagtgcgaggaaaatctatgttagggaaagtaggaagttgaaaattaaa
agggttgctgatgttgttgaagcactaattggtgcatatcttagcataggcggtgaaaca
gcagccttattatttatggattggatgggtataaaggtagatttccacactacaccgtat
gagaggctcttccaagttcatgccgagaaacatctgaatgtgagagatttggagtctttg
ttgaactatgagttccatgatccttctctgctactggaagctttgacccacggttcttac
atgcttcccgagattccaagatgttatcagcgacttgaatttcttggggacgctgtgtta
gattatctcgtgacgatgcatttctacaataaatatcctgggttgtcaccagaattgtta
actgacatgagatctgcttctacgaataatgattgttatgcaagatctgcagtcaagttt
gaactgcacaaacacatccttcatacctcacgagaactccacaggcatatagttgaaaca
gttaacaactttgaaaagttatctttagaatcaacttatggatgggagtcggagtcaact
ttccccaaggtacttggtgatgttatagagtctttggcaggagccattcttgtcgattca
ggatacaataaggagaaagtctttcagagtataaggcgtcttttggagcctttgattact
cctgaaacagtgatgccccatcctggaaaggagttaaatgagttatgccaaacaaagcat
tataatatgaaagaacgcatcaagtctcataacaagggtatgacttccattacagtagag
gttgaagtaaatgggatctctttcaagcatacagctacggctgctaaaactaagacagcg
ataaagattgcatccaaagaagtattgaagtctctgaaggaacaaaccctatga
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