Corylus avellana (European hazelnut): 132170316
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Entry
132170316 CDS
T09426
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132170316
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cave03041
]
132170316
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132170316
Spliceosome [BR:
cave03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
132170316
Complex B
132170316
Complex C
U2 SnRNP specific factors
132170316
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
132170316
NCBI-ProteinID:
XP_059437229
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Position
ca2:16364733..16370522
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AA seq
760 aa
AA seq
DB search
MSKRKFGFEGFGINRQATYNFERSQPPQRLFAPPHDNYEDTDVDNIDFDDNEEATAKDDR
NDEIDPLDAFMEGIQEEMRSAPAPKAKEKAERLDDDDDDPMETFLRAKKDLGLTLASEAL
RAGYDSDEEVYAAAKAVDAGLLEYDSDDNPVVLDKKRIEPIPALDHSEVDYEPFNKDFYE
EKDSISGMSEQDVDEYRKSLAIRVSGFDVPRPIKTFEDSGFSLQLMNAIKKQGYEKPTSI
QCQAFPIVLSGRDAIGIAKTGSGKTAAFVLPMIVHIMDQPELAKEEGPIGVICAPTRELA
HQIYLEAKKFAKSHGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMIKMKALTML
RATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPVRI
TVGEVGMANEDITQVVHVIPSDTEKLLWLLEQLPGMIDNGDVLVFASKKAAVDEIESQLA
QKGFKVAALHGDKDQASRMETLQKFKSGIYHVLVATDVAARGLDIKSIKSVVNFDIARDM
DMHVHRIGRTGRAGDKDGTAYTLITHKEARFAGELVNSLVAAGQNVSVELMDLAMKDGRF
RSKRDARKGGGGKKGRAKGGASGRGVRGVDYGLGIGYSAESTNTTSSPVPSRSAAVNSLK
TGMMAQFKNNFVAASSNPQNQNQGMSNSSSAYANKRPALAGFVSGGSIGGDIYKTQPTSS
FPPAMSGVNTPSSGENASQKNTESSRDRPRERRRPSGWDR
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcggaagttcggcttcgaaggcttcggcatcaaccgccaagccacctacaac
ttcgagcgctctcaaccccctcagcggctcttcgcccctccccacgacaactacgaggac
accgacgttgacaatatcgatttcgatgacaacgaggaagcgaccgccaaggacgaccga
aatgacgagattgaccctctcgacgcgttcatggagggcatccaggaggagatgcgatcc
gcgccggcgccgaaggcgaaggagaaggcggagaggttagacgacgacgacgacgatcct
atggagaccttcctccgggcgaagaaggaccttgggttgacgctggcatccgaggccctc
cgcgcagggtacgattccgacgaggaggtctacgccgcggcgaaggcggttgacgccggc
ttgttggagtacgactccgacgacaacccggtggtgctcgacaagaagcggatcgagccg
attccggctctggaccacagcgaggtcgactacgagcctttcaataaggatttctacgag
gagaaggattcgatttctgggatgagtgagcaggatgttgatgagtaccggaagagcttg
gctattcgtgtatcaggatttgatgttccaaggccaattaagacatttgaagactctggt
ttttctctgcaactcatgaatgctataaagaaacaagggtatgaaaagcctacatcgata
cagtgccaggcttttccgattgtgctatctgggagagatgccattggtatagcaaagacg
ggttctggtaaaactgccgcttttgtgcttcccatgattgtccatattatggatcagcct
gagcttgcgaaagaagagggtcctataggagtgatatgtgcacctactagagagttagca
caccaaatatacttagaggccaagaaatttgcaaagtcacatgggatacgtgtctctgct
gtctatggtggcatgtcgaaacttgagcagttcaaagaacttaaggctggatgtgagata
gtggttgctactcctgggagattgattgacatgataaagatgaaggcactgacgatgtta
agagccacttacttggtacttgatgaggctgatcggatgtttgaccttggatttgaaccg
caaattaggtctattgttggtcagattaggccagaccgccagactttattattttctgcg
acaatgccccgtaaagttgagaagttagctagggaaatccttactgatcctgtaagaatt
acagtaggggaggtgggaatggccaatgaggatattactcaggtggttcatgtaattcct
tcggatacggagaagttgctttggcttcttgaacagctacctggaatgattgacaatgga
gatgttttagtgtttgcttcaaaaaaagccgcagtggatgagattgaatcacagctggct
caaaaaggttttaaagttgcagctcttcatggtgacaaggaccaggcttctcgtatggaa
actttgcaaaaatttaaatctggcatctaccacgttcttgttgcaactgatgttgctgct
cgtggtcttgacatcaaatcaattaaatcagttgtgaactttgatattgcaagagacatg
gacatgcatgtccatcgtattggtagaacaggtcgtgctggtgacaaagatgggactgca
tacactctaattactcataaagaggcacggtttgctggtgaattggttaatagtttggtt
gctgctggtcagaatgtttcggtggaactgatggatcttgctatgaaggatgggagattc
aggtccaaacgtgatgcaagaaaaggaggaggagggaaaaagggtagagcaaagggtggt
gctagcggtcgaggtgttcgtggtgttgattatggcttgggcattggctatagtgcagaa
tccactaatactacatccagccctgttccaagtcgatctgcagctgttaattcactcaag
acaggaatgatggcacaatttaagaataattttgttgctgcttcatcaaaccctcagaat
cagaatcagggtatgagcaacagttcaagtgcttatgccaacaagagaccagcactagca
ggctttgtatctggtggttcaattggtggagatatatataaaacacaaccaaccagttca
ttcccccctgctatgtcaggtgtaaacacccccagctctggagaaaatgcaagccaaaag
aacacagaaagttcgagagatagacctagagaaaggcggaggccctccggttgggatcgg
taa
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