Corylus avellana (European hazelnut): 132170394
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Entry
132170394 CDS
T09426
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132170394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cave03041
]
132170394
03009 Ribosome biogenesis [BR:
cave03009
]
132170394
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132170394
Spliceosome [BR:
cave03041
]
Complex A
U2 snRNP components
U2 related factors
132170394
Complex B
132170394
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
132170394
Ribosome biogenesis [BR:
cave03009
]
Eukaryotic type
90S particles
Helicases
132170394
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
ABC_tran
T2SSE
AAA_30
Cas3-like_C_2
AAA_7
AAA_SelU
Flavi_DEAD
nSTAND_NTPase5
TsaE
UvrD-helicase
PhoH
FtsK_SpoIIIE
SLFN-g3_helicase
NACHT
AAA_29
Motif
Other DBs
NCBI-GeneID:
132170394
NCBI-ProteinID:
XP_059437349
UniProt:
A0ACM5K7G6
LinkDB
All DBs
Position
ca2
Genome browser
AA seq
728 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSSKISKSNGGGGAAMNNNNGGFNRWTGKPYSQRYYEILEK
RRSLPVWHQKEEFLQVLKANQTIILVGETGSGKTTQIPQFVLEAVDMENADKRRKLMIGC
TQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSAKTVLKYLTDGMLLREAMTDPL
LERYQVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFAAPLM
KVPGRLHPVEIFYTQDPERDYLEAAIRTVVQIHMCETPGDILVFLTGEEEIEDACRKIAK
EVANMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPVIEGGPPGRKIVVSTNVAETSLTI
DGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSF
HNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALD
DEGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAA
DEAKARFGHIDGDHLTLLNVYHAYKQNNDDPSWCYENFVNHRALKSADNVRQQLVRIMAR
FNLKLCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHK
PEWVIYNEYVLTSRNFIRTVTDIRGEWLIDVAPHYYDLTNFPQCEAKRVLERLYKKREKD
REESKNKK
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgggaacggagaggaagaggaaggtgagcttgttcgacgtggtggacgagacgtcggtc
tcctcgaagatctcaaaatcgaacggtggaggaggagctgcgatgaacaacaacaatggc
gggttcaatcggtggacgggaaagccgtactcgcagaggtactacgagatactggagaag
agaaggagcttaccggtgtggcaccagaaagaagagttcttgcaggtcctcaaggccaac
cagaccatcatcctagtcggtgagactggtagtggcaaaaccactcagattccccagttt
gttttggaagctgttgatatggaaaatgcagataaacgcagaaagttgatgattggatgc
actcagcctcgaagggtggctgcaatgtctgtttctagacgtgttgctgaagagatggac
gtaactattggagaagaggttggttacagtatccgttttgaagactgcagtagcgcaaaa
acagttttgaaatatctaacagatggtatgctgctgagggaagcaatgacagatccactt
ttggagcgttaccaagtcataattcttgatgaggctcatgaaagaacattggcaactgat
gttctatttgggcttctgaaggaggtgttgaaaaatagacctgacctgaagctagttgtg
atgagtgcaactcttgaggctgaaaagtttcagggatatttttttgctgcaccacttatg
aaagttcctgggaggcttcatcctgtggagatattctacacccaagatcctgaaagggac
tatctggaggcagcaatccggacagttgtgcagattcacatgtgtgaaactcctggagat
atacttgtgttcctcactggtgaggaggagatagaagatgcatgccggaaaatagcgaag
gaagttgcaaatatgggtgaccaggtgggaccggtgaaagtagtgcctctgtattctacc
cttcctccagctatgcagcagaagatctttgaaccggctccacctccagtgattgagggt
ggtcctcctggaaggaagattgtggtgtcaacaaacgttgcagaaacttctttgaccatc
gatggtatagtatatgttattgacccggggtttgcaaaacaaaaggtttataacccacga
gtgcgagttgaatccttgttggtatctccaatatctaaagccagtgcacatcagagatcg
gggcgtgctggaagaactcagcctgggaaatgctttagactttatactgagaaaagtttc
cataatgatcttcagccgcagacctatccagaaatattgagatcaaaccttgcaaatacg
gttcttaccctgaagaaattggggatagatgatctggtgcattttgattttatggatcct
cctgctccagagacattgatgcgggcattagaggttttgaattacttgggagcattagat
gacgaaggaaatttgacaaaacttggggaaattatgagtgaatttccattagatcctcag
atgtcaaagatgctcgttgttagccctgagttcaattgttcaaatgaaattctgtcgatt
tctgccatgctttcagtacccaattgctttgtccggcctagggaggctcaaaaagctgct
gatgaagcgaaagctaggtttgggcacatcgatggagatcacctgacgctcttgaatgtg
taccatgcttacaagcaaaacaacgacgatccatcttggtgctatgagaactttgtcaat
catagggcgttgaagtctgctgataacgttagacaacagctagtgcgcatcatggccagg
ttcaacctcaagttgtgcagcactgatttcaacagccgtgactactacatcaacataaga
aaggctatgctagcaggatacttcatgcaggtagctcacctggaaagaactggacactac
ttgactgtgaaagacaaccaagtggtgcacttgcatccttcaaattgcttggatcacaag
ccagagtgggtcatttataatgaatatgtcctaacaagcaggaatttcattcggacagtg
acagacatccgtggtgaatggctaattgatgtagcaccacactattatgatttgacgaac
ttcccccaatgtgaggccaaacgtgttctggaaaggctatacaagaagcgggagaaggac
agagaggagagcaagaacaaaaaatga
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integrated database retrieval system
