Corylus avellana (European hazelnut): 132170569
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Entry
132170569 CDS
T09426
Name
(RefSeq) uncharacterized protein LOC132170569
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132170569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132170569
03041 Spliceosome [BR:
cave03041
]
132170569
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
132170569
Spliceosome [BR:
cave03041
]
Complex B
Other components
Prp19-related factors
132170569
Complex C
132170569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
DUF5955
Motif
Other DBs
NCBI-GeneID:
132170569
NCBI-ProteinID:
XP_059437573
LinkDB
All DBs
Position
ca2:complement(44434682..44442421)
Genome browser
AA seq
919 aa
AA seq
DB search
MSIEKDLYPSQDDLLYEEEVLRNPFNLKLWWRYLIARSDAPFRKRFILYERALKALPGSY
KLWHAYLRERLDLVRNLPITHSQYEALDNTFERALVTMHKMPRIWIMYLQTLTHQKLVTR
TRRTFDRALCALPVTQHDRIWEPYLLFVSQKGVPIETSLRVYRRYLKYDPTHIEDFIEFL
VNSSLWQEASERLASVLNDDDFFSIKGKTKHRLWLELCDLLTRHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLAEYYIRRNLHDKARDIFEEGIMTVVTVRDFSVIFDSYSQFEESML
AHKMENVSSSDEEDEGEEENGVEDDEDVRLDINLSVAKLQKKMLNGFWLHDDKDIDLRIA
RLEYLINRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTIDPMKAVG
KPHTLWINFSKLYESHKDIANARVIFDKAVQVNYKTVDHLATLYCEWAEMELRHKNFKGA
LDLMRRATAEPSVEVKRRVAADGNEPVQMKLYRSLRLWTFYVDLEESLGNLESTRAVYER
ILDLRIATPQIILNYAFLLEEHRYFEDAFKVYERGVKIFKYPHVKDVWVTYLSKFVKRYG
KSKLERARELFEHAVEMAPADAVKPLYLQYAKLEEDYGLAKRAMMVYAKATKAVPNNEKL
SMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAELEKSLGEIDRARGVY
VFASQFADPRSDGDFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQK
DQRLDLDDARDKLKQAGVAEDEMAALERQLAPTTTPAKDGSRKVGFVSAGIESQTDGGIK
ATANHEEIELPEESDSDEDVKVEIAQKDVPDAVFGGLVRKRDDEAEKDGEEHNAAATKDR
DDDSRLGALERIKRQKRGA
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcgagaaggacctgtacccttcgcaggacgacctcctctacgaagaggaggtc
ctccgcaacccgtttaacctcaagctctggtggcgctacctaattgcacgctccgacgcc
ccattccggaagcgatttatcctttacgagcgagccctcaaggccctccctggaagctac
aagctatggcacgcctatctccgcgagcgcctcgacctcgtgcgcaacctccccatcacc
cactcccagtacgaagccctagacaacaccttcgagagagccctagtcaccatgcacaag
atgccccgcatttggatcatgtacctccaaaccctaacccaccaaaagcttgtcacccgg
actcgccgcaccttcgaccgggccctctgcgcgttaccggtgacccagcacgatcggatt
tgggaaccctacctcctgttcgtcagccaaaagggtgtcccgatcgagacctcgcttagg
gtttatcgcaggtacttgaaatacgatcctactcatatagaagatttcattgaatttttg
gttaattcgagtctttggcaagaggcttcggagcgattagcttcagttttgaatgatgat
gattttttttcgataaaggggaagactaagcataggttgtggttagagttgtgtgatttg
ctcactaggcatgccactgaggtctctggtttgaatgtggatgcgataattagaggtggg
attaggaagttcaccgacgaggttgggcggttgtggacctccctcgccgagtattatatt
aggaggaatttgcacgacaaggctagggatatattcgaggagggtatcatgactgtggtc
actgtgagggactttagtgtgatttttgattcatattcgcagtttgaggagagcatgctt
gctcataagatggagaacgtgagctcgagtgacgaggaggatgaaggagaggaagaaaac
ggtgttgaagatgatgaagatgttcggttggatatcaatttatcagtggccaagcttcag
aagaagatgcttaacggattttggttacacgacgataaggatatagatttgaggattgct
cgattagagtatctcattaatagaagacccgaattggctaacagtgttctgttacgacaa
aatcctcataatgtggagcagtggcatagaagggtgaagttgtttgagggtaatcccacg
aagcagatcttgacttacactgaggcggtgaggacgattgatcctatgaaagctgtgggg
aagcctcacacattgtggattaatttttccaagctgtatgagagccacaaggatattgcc
aatgccagagttatatttgataaggctgtgcaagtaaactacaagactgttgatcatctg
gctacattgtattgtgagtgggccgaaatggaactgaggcataaaaatttcaaaggagca
ctggatttgatgaggcgtgccacggcagagccatccgtggaggtgaaacgaagagtggct
gccgatgggaatgaaccagttcagatgaagctctataggtccttgagactttggaccttc
tatgttgatttagaagagagcctgggtaacttggaatccactcgagcagtgtatgagcgg
atattggatctaagaatagctacaccccaaattattctcaattatgcatttctgctggaa
gaacatagatacttcgaagatgcattcaaagtatacgaaagaggtgtcaagatttttaag
tatccacatgttaaagatgtatgggttacatacctctcaaaatttgtaaagagatatgga
aaatcaaaactagagcgggcaagagagctgtttgagcatgctgttgaaatggcccctgct
gatgcagtaaaacctttgtatcttcaatatgcaaagctggaggaggattatggtctggca
aagcgagctatgatggtctatgctaaagcaactaaggctgttccaaacaacgagaagttg
agcatgtatgaaatttacattgctcgagcagcagagatttttggtgtcccgaaaacaagg
gaaatatatgagcaagcgatagagtctggtcttccagacaaagatgtgaagaccatgtgc
ttgaaatatgccgagcttgagaagagcttgggagaaattgatcgtgctcgtggagtatat
gtatttgcatctcaatttgcagatccacgatctgatggggacttctggaataaatggcac
gagtttgaggtgcagcatggaaatgaagataccttccgagaaatgcttcgtattaaaaga
agtgtttctgcaagctatagtcagacacactttatcctgcctgagtatctgatgcaaaag
gatcagagattggaccttgatgatgcaagagacaaattgaagcaagctggggtcgcagaa
gatgaaatggctgctctcgaaagacagttagctcccacaaccacccctgctaaagatggt
agcagaaaagtaggctttgtgagtgctggtattgaatcacagactgatggaggtataaaa
gctactgcaaatcatgaagagattgagctaccagaagaaagcgattcggacgaagacgtg
aaagttgaaatcgcacaaaaagatgttccagatgcggttttcggaggcttggttcgtaag
agagatgatgaagctgaaaaagatggggaagagcacaatgcagcagctactaaagatagg
gatgatgacagccgcctaggcgccctggagagaataaagaggcaaaagagaggagcttga
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