Corylus avellana (European hazelnut): 132170659
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Entry
132170659 CDS
T09426
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X1
KO
K14962
COMPASS component SWD2
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132170659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132170659
03036 Chromosome and associated proteins [BR:
cave03036
]
132170659
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
132170659
Chromosome and associated proteins [BR:
cave03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
132170659
COMPASS/SET1 complex (yeast)
132170659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_TEP1_2nd
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_SPT8
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_SCAP
Beta-prop_NUP159_NUP214
WDR90_beta-prop_4th
Beta-prop_VPS8
KNTC1_N
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
VPS11_N
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
132170659
NCBI-ProteinID:
XP_059437704
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All DBs
Position
ca2:1843666..1847981
Genome browser
AA seq
332 aa
AA seq
DB search
MGGTQSEREDKVSLELSEEILQSMEVGMTFRDYNGRISSMDFHKTSSYLVTASDDESIRL
YDVASATCLKTINSKKYGVDLVCFTPHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH
HDRVVSLSLCSRKECFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATSYDEQGLVFAVAF
GGYIRMFDARKYERGPFDIFSVGGDTSDANVVKFSNDGRLMLLTTMDGHIHVLDSFRGTL
LSTYNVKPVSSKSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEAASWMSTDTEPPVIK
WAPGSLMFVTGSSELSFWIPDLSKLGAYVGRK
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgggcggaacacaatcagagagagaagacaaggtttcgttggagctcagcgaggaaatt
cttcagagcatggaagtcggcatgaccttcagagactataatggtagaattagctccatg
gattttcataagacatcaagttatcttgtaacggctagtgatgatgaatccattcgcctt
tatgatgttgccagtgcaacctgtttgaagacaattaacagcaaaaagtatggggttgat
ctggtttgctttactcctcaccctacaacagtcatatactcttcaaaaaatggatgggat
gaatctctgaggctactatcattgcacgacaacaagtatttgcggtattttaaaggtcac
catgacagggttgtgtcactcagcttgtgctctcgcaaggaatgctttatctctggctct
ctggatcgaactgtattgctttgggatcaacgagctgagaagtgtcagggtcttttacgt
gtacaaggaaggcctgctacatcatacgatgaacaagggctcgtctttgcagttgcattt
ggaggatatatcagaatgtttgatgctcgcaaatatgaaaggggcccttttgacatcttt
tccgttggaggagatacatctgatgcaaatgttgtaaagttcagtaatgatgggagactt
atgcttttgacaactatggatgggcatattcatgtgcttgattcattccgtggcacactt
ttatccacatataacgtcaagcctgtttcaagcaaatccacattagaggcatccttcagc
ccagagggaatgtttgttatatcaggttcaggtgatggtagtgtttatgcttggagtgta
cggagtgggaaagaagctgctagctggatgagtaccgacactgagcctcctgtcataaaa
tgggctcccggaagtcttatgtttgtaactggctcttctgaactgtcattctggataccg
gacttgtctaagttgggagcttatgttggaaggaagtag
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integrated database retrieval system
