Corylus avellana (European hazelnut): 132170732
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Entry
132170732 CDS
T09426
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
132170732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cave04121
]
132170732
Ubiquitin system [BR:
cave04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
132170732
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
F-box
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
132170732
NCBI-ProteinID:
XP_059437800
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Position
ca2:13865296..13869185
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AA seq
585 aa
AA seq
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MQRMAGSSFPEEVLEHVFSFIQDGKDRNVISMVCKSWYEIERWSRRRVFVGNCYAISPRM
LIRRFPEVRSVELKGKPHFADFNLVPEGWGGYVGPWIAAMAVAYPWLEEIRLKRMVVTDE
GLELISKSFKNFKVLVLSTCEGFSTEGLAAIAANCRNLRELDLRESDVEDQSGHWLSHFP
DNYTSLVSLNISCLGSEVSFSALERLVGRCPNLRTLRLNRAVPLDRLANLLRRAPQLVEL
GTGVYASELRPDVFSNLSGAFSGCKELRGLSGFWDVVPGYLPAVYPICSRLTSLNLSYAT
IQSPDLIKLVSQCQNLQRLWVLDYIEDAGLDVLAASCKDLQELRVFPSDPYEAEPNVSLS
EQGLVSVSAGCPKLESVLYFCRQMSNAALRTIARNRPNMTRFRLCIIEPRTPDYVTLQPL
DAGFGAIVEHCKDLQRLSLSGLLTDRVFEYIGTFAKKLEMLSVAFAGESDLGLHHILSGC
ENLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYGACKLLGQKLPRLNVEVIDE
RGHPNSRPESCPVEKLYIYRTVAGPRFDMPNFVWTMDEDSELRLS
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgcagagaatggcggggagctcgttcccggaggaggtgttggagcatgtgttctcgttc
atacaggatgggaaggacaggaacgtgatctcgatggtgtgcaagtcgtggtacgagatc
gaacggtggagcaggaggagggtgttcgtggggaactgttacgcgatcagccctcggatg
ctgatccgacgcttcccggaggtcaggagcgtcgagcttaaggggaagccccacttcgcc
gacttcaaccttgttccggaaggctggggaggctacgtcggcccctggatcgccgccatg
gcggtggcctacccgtggctggaggagattcggctcaagcgcatggtcgtcaccgacgag
ggcttggagctaatctccaagtccttcaagaacttcaaggtccttgtgctttccacgtgc
gaggggttcagcactgagggcttagccgccattgctgccaattgcaggaatttgagagag
ctggacctgcgggagagtgatgtggaagaccagagtgggcactggctcagccattttcct
gataactacacctcattggtgtcccttaacatttcctgcctagggtctgaggtgagtttc
tctgccctggagcgcctggtgggtaggtgccccaacctgaggactctccggctcaaccgt
gctgtgccccttgacaggcttgcgaaccttcttcgtcgggcacctcagctggttgagtta
ggcacgggtgtctatgcgtctgagttgcgacctgatgtcttctcaaacctatcaggagct
ttttctggatgcaaggaactgaggggcctgtctggtttttgggacgtagtcccaggctat
cttccagctgtttaccctatctgctctaggttaacatcattgaacttgagttatgccact
atccaaagccctgatcttatcaagctagttagccaatgtcaaaatttgcagcgcttatgg
gtgttggattacattgaagatgctggtcttgatgtccttgcagcatcttgcaaggatctg
caagaattgagggtatttccatccgatccttatgaagcagaaccaaatgtatccttgtca
gaacagggccttgtctcagtttctgcaggctgccccaagctcgagtctgttctgtacttc
tgccgtcaaatgtctaatgctgccttaaggaccattgcaaggaatcgacctaacatgaca
aggtttcgtctttgtattattgagccacgaactcctgattacgttactcttcaaccactt
gatgcgggatttggagccattgttgagcactgcaaggatctacagcggctctccctttct
ggtcttctcactgatcgtgtgtttgagtatattgggacttttgccaaaaaattagagatg
ctctctgtagctttcgccggagaaagtgatctgggactccatcacatactgtctggttgc
gaaaaccttaggaaactggagattagggactgcccctttggtgacaaggctcttttggcc
aatgctgcaaagctggagacaatgcgatccctttggatgtcttcttgttctgtgagttac
ggagcatgtaagctgctaggtcagaagttgccaaggcttaatgttgaggttattgatgaa
aggggacatccaaactcgagacctgaaagctgccccgttgagaagctttatatatatagg
accgttgcggggccaaggtttgacatgcctaattttgtttggacaatggatgaagattct
gaattgaggctgtcctga
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