Corylus avellana (European hazelnut): 132171000
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Entry
132171000 CDS
T09426
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132171000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cave03041
]
132171000
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132171000
Spliceosome [BR:
cave03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
132171000
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_22
AAA_19
T2SSE
AAA_30
nSTAND3
Flavi_DEAD
AAA_16
Motif
Other DBs
NCBI-GeneID:
132171000
NCBI-ProteinID:
XP_059438178
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All DBs
Position
ca1:<35579167..35581998
Genome browser
AA seq
943 aa
AA seq
DB search
KPKQRSCTMLDDAAADDEDNGVGGDADHRTRKANTHKKRFRKKIESQEEEDGEVIARGAT
ERRQVKRRTSDDGSESEEERLCDQREREQLEQNIRERDTAATRKLTEPKLLRRKKQEAMR
RSDALEKNGLEALRKVSRQEYLKKREQRKLEELRDDIEDEQYLFDGVKLNEAEYRELRYK
KEIYELVKKRSEDADNTSEYKMPEAYDQEGGVNQEKRFSVALQRYRDATAAGKMNPLAEQ
EAWEEHQIGKATMTFASKNKKQISDDYQFVFEDQTDFIKASVMDGENIIDDKKSTEREKS
TAALEERKTLPIYSYRDELLKAVHDHQILIIVGETGSGKTTQIPQYLHEAGYTKRGKVGC
TQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTLIKYMTDGMLLREFLGDPE
LASYSVVMVDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIF
KIPGRRYPVEIHYTKAPEADYLDAAIVTVLQIHTTQPSGDILVFFTGQEEIETAEEILKH
RTRGLGTKIADLIICPICANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVI
DPGFCKMKSYNPRTGMESLLVAPISKASANQRAGRSGRTGPGKCFRLYTAYSYQNELEDN
TLPEIQRTNLASVVLALKSLGIHDLLNFDFMDRPPCEALLKALELLFALGALNKLGELTK
VGRRMAEFPLDPLLSKMIVASEKHKCSDEIISIAAMLSIGNSIFYCPKEKRVHANNARMN
FHTGNVGDHIALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDVRGQLEGLLKRVEIEV
TSNPNDLEAIKKAITSGFFPHSARLQKNGCYRTVKHPQSVHIHPSSGLAQVIPRWVLYHE
LALTTKEYMRQVTELKPEWLLEIAPHYYQLKDVEDRSGFPTIL
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
aaaccgaagcagaggtcttgcacaatgttggatgatgctgctgctgatgatgaagacaat
ggtgttgggggagacgctgatcataggactagaaaagccaatacccataaaaaacgtttc
aggaagaagattgaaagtcaagaagaggaagatggtgaagtaattgcacgaggggcaaca
gagagacgacaggttaaaagaagaacttccgatgatggttcagagtcagaagaagaaagg
ttgtgtgaccaaagagagagggagcaattggagcaaaatataagggagcgggatacagca
gcgacacggaagttaaccgaaccaaaattattacgaaggaagaaacaagaagcaatgagg
agatctgatgctttggagaaaaatggccttgaagccttgagaaaagtttcaagacaagaa
tatttgaagaaaagagagcaaaggaaacttgaggaattaagggatgatatagaagacgag
caatatctgtttgatggcgtgaagcttaacgaagcggaatatcgcgagttaaggtacaag
aaggaaatatacgagcttgtgaagaagcggtcagaggatgccgacaatacaagtgagtac
aagatgccggaagcctatgatcaggaaggcggtgttaatcaggaaaagagattttccgtg
gctttgcagcgttacagggatgcaactgctgcgggaaaaatgaatcctcttgcagaacaa
gaggcttgggaggagcatcaaattgggaaggcaacgatgacatttgcttcaaaaaataaa
aagcaaatatctgatgactatcagtttgtgttcgaggatcagactgattttatcaaagca
tcagtaatggatggagagaatattattgatgacaagaagtctactgagagagaaaaatca
acagcagctttggaggagagaaaaacattacccatatattcatatcgggatgagttgctc
aaagctgttcatgatcatcagattcttatcattgttggtgaaactggttccgggaaaact
acccagataccccaatatcttcatgaagctggatacacaaagcgtggaaaggttgggtgt
acacagccacgaagggtcgctgctatgagtgtggccgcccgagtttctcaagaaatgggt
gtcaaacttggccatgaggttggttattccatccggtttgaagattgcacttcagaaaag
actcttattaaatatatgacagatgggatgctgctgagagaattccttggtgacccagag
ctggcaagctacagtgtggtgatggtggatgaggcccacgaaagaactctctcaactgat
attttgtttggattagtaaaggatattgctcgatttcgccctgatctgaagttgcttatc
tccagtgcaacacttgatgcggagaaatttagtgattattttgattcagctccaatcttt
aaaattccagggaggcgatatcctgttgaaatacactacaccaaagctccagaagctgat
tacttggatgccgccatagttactgttctccaaattcatacgacacaaccaagtggagat
atattggttttcttcacaggtcaagaagagattgaaacagctgaagaaattctaaagcac
aggacaaggggcctggggacgaagattgctgacctgattatctgccccatatgtgcaaac
ctacccactgagctccaagcaaaaatatttgaacccactcctgaaggagcgcggaaggtt
gttctcgcaacaaacatagctgaaacctccttgactatagatgggatcaaatacgtaatt
gatccaggcttctgtaaaatgaaatcgtataatccaaggactgggatggagtcgttgctg
gttgctcctatttccaaagcatctgctaatcaaagggcgggtcgatctggacgaacaggt
cctggaaaatgcttccgactatacactgcctacagttatcagaacgagttggaagacaat
acattaccagaaatacaaaggacaaaccttgcaagtgttgtcctcgcactcaagagtctt
ggtatccatgacttgttaaattttgattttatggatagaccgccatgtgaagcattatta
aaagccctggaactactctttgcactaggtgcactaaataaactcggtgagttgactaaa
gtgggaagacggatggcggagttcccccttgatcccctgctatccaaaatgatagttgct
tctgaaaagcacaagtgctcggatgagatcatttccattgcggccatgctttctattgga
aactccatcttttattgtccaaaggagaaacgagttcatgccaacaacgcgcggatgaat
tttcatacaggaaatgttggggatcacattgcattgctaaaggtgtacaattcgtggaag
gagacaaattactcgacacaatggtgttatgaaaattatatacaggttaggagtatgaag
cgtgcaagggatgtgcgaggccagcttgaagggctgttgaaaagggttgaaattgaagta
acctcaaaccccaatgacttggaggctataaaaaaagctataacatctggttttttccca
cattctgcaaggctacaaaagaatggatgttatcggacagtcaaacatccacagagtgtt
cacatacaccccagctcagggctagcacaggtcattccgagatgggttttatatcatgag
ttggcactcacgaccaaggaatacatgagacaggtaacagaactaaagccggagtggttg
ctggaaatagccccacactattaccagcttaaggatgttgaagacagatcagggtttcct
acaatcctttga
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