Corylus avellana (European hazelnut): 132171137
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Entry
132171137 CDS
T09426
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03018
RNA degradation
cave03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132171137
09123 Folding, sorting and degradation
03018 RNA degradation
132171137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132171137
03041 Spliceosome [BR:
cave03041
]
132171137
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132171137
mRNA degradation factors
5'-3' decay
Lsm complex
132171137
Spliceosome [BR:
cave03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
132171137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
132171137
NCBI-ProteinID:
XP_059438356
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Position
ca2:15006735..15009743
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AA seq
150 aa
AA seq
DB search
MLPLSLLKSAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKNRSDRRPLGVGRGRGRGREDGPGGRQAKGIGRGLDD
GSAKGPGGGRGRGGSGGKTGGNRGVGRGRG
NT seq
453 nt
NT seq
+upstream
nt +downstream
nt
atgcttccactttctctacttaagagtgcccaagggcacccaatgttggtggaactgaaa
aatggggagacctacaatgggcatttggtcaactgtgatacttggatgaacattcatctt
cgtgaagttatctgtacctctaaagatggtgatcgattttggcgaatgcctgaatgctac
atccgtgggaatacaatcaagtaccttcgagttcctgatgaggtgatagataaagttcag
gaagaaaccaagaaccgctcagataggaggccacttggggtagggcgcggaagaggacga
ggtagggaggatggtcctggaggacgccaagcaaaaggaattgggcgtggtttggatgat
ggaagtgctaagggtcccggtggaggccgaggcagaggtggatctggtggaaagaccggc
ggaaacagaggtgtagggcgtggccgtggctga
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