KEGG   Corylus avellana (European hazelnut): 132171137
Entry
132171137         CDS       T09426                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
cave  Corylus avellana (European hazelnut)
Pathway
cave03018  RNA degradation
cave03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cave00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    132171137
  09123 Folding, sorting and degradation
   03018 RNA degradation
    132171137
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cave03019]
    132171137
   03041 Spliceosome [BR:cave03041]
    132171137
Messenger RNA biogenesis [BR:cave03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     132171137
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     132171137
Spliceosome [BR:cave03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    132171137
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 132171137
NCBI-ProteinID: XP_059438356
LinkDB
Position
ca2:15006735..15009743
AA seq 150 aa
MLPLSLLKSAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKNRSDRRPLGVGRGRGRGREDGPGGRQAKGIGRGLDD
GSAKGPGGGRGRGGSGGKTGGNRGVGRGRG
NT seq 453 nt   +upstreamnt  +downstreamnt
atgcttccactttctctacttaagagtgcccaagggcacccaatgttggtggaactgaaa
aatggggagacctacaatgggcatttggtcaactgtgatacttggatgaacattcatctt
cgtgaagttatctgtacctctaaagatggtgatcgattttggcgaatgcctgaatgctac
atccgtgggaatacaatcaagtaccttcgagttcctgatgaggtgatagataaagttcag
gaagaaaccaagaaccgctcagataggaggccacttggggtagggcgcggaagaggacga
ggtagggaggatggtcctggaggacgccaagcaaaaggaattgggcgtggtttggatgat
ggaagtgctaagggtcccggtggaggccgaggcagaggtggatctggtggaaagaccggc
ggaaacagaggtgtagggcgtggccgtggctga

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