Corylus avellana (European hazelnut): 132171373
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Entry
132171373 CDS
T09426
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2-like isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03022
Basal transcription factors
cave03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132171373
09124 Replication and repair
03420 Nucleotide excision repair
132171373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cave03021
]
132171373
03400 DNA repair and recombination proteins [BR:
cave03400
]
132171373
Transcription machinery [BR:
cave03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
132171373
DNA repair and recombination proteins [BR:
cave03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
132171373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
132171373
NCBI-ProteinID:
XP_059438651
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Position
ca2:complement(27965377..27973049)
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AA seq
443 aa
AA seq
DB search
MPQVKIIAKNFMDMVASLPAMKLDKLYENAFICEAILRSLPPLAKKYVIQMLYIDVPITA
KSMEEWVFPDGSSMHRVAIDRLIKLRIFTDTADRRRETTYRINPTFQTNLQKLLTLGEVL
PREPMPSDITVRLPSLEDLEVYALEQWECFLLQLINSAQAERPSNISSSMMRILQRGLLS
QREKGAPRLTESVFQFLLMDTNAQLWYIIREYISNSEERDVDPADLISFLLELSCHVTGK
AYNSNTLTEIQKSWIKDLTDLGLVKLQQGMNESWFIPTKLATNLSVCLTDSSSRKQGFVI
VEGNFRLYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITEESLYNAFENGIAAEQIITFL
QQNSHPCVAERMPSIPENVTDQIRLWESDLNRVERTPAHYYDEFPSRDVFEAACDNAREW
NGLPWEDSKTMRLVVKAEIHMYN
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaggtgaagataatcgcgaagaatttcatggacatggtggcctccttgcccgcc
atgaagctcgacaagctctacgagaacgctttcatctgcgaagccattctcaggtctctg
ccacctctggccaagaagtatgttatacagatgttgtacattgatgttccaataacagcc
aagtctatggaggagtgggtgtttccagatgggtcctcaatgcatagagtcgcgattgat
aggttgattaagttacggatattcactgacactgctgacaggagaagggaaacaacttac
agaattaatccaacattccagacaaacctccaaaagcttttaacacttggcgaagtttta
ccaagggaaccaatgccttctgacataactgtgaggctcccaagcttggaggatcttgag
gtttatgcccttgaacaatgggagtgtttcttgctccaacttataaactcggcgcaagct
gaaaggccatcaaatatcagctcttctatgatgagaattttgcagcgagggcttttgagt
caaagggagaaaggagctccacgattaactgaaagtgttttccagttcttgttgatggac
acaaatgcacaactttggtacatcatcagagaatacatctctaattctgaggagcgagat
gtggacccagccgatttgatttcattcttactagagcttagttgtcatgtcacaggaaag
gcatataatagtaacacattgacggagattcagaagagttggatcaaggacctcacagac
ttgggattggttaaacttcagcaggggatgaacgagagttggtttatacctactaaatta
gctaccaatctttcagtgtgcttaacagattcatcatcacggaaacaaggatttgtaatt
gtggaaggaaattttaggttgtatgcatactcaacttcaaagttacactgtgaaattcta
cgtcttttctcaaggatagagtatcaacttccaaatcttatagtgggagcaatcacagaa
gaaagtttgtataatgcttttgaaaatggtattgcagcagagcagattattacttttctt
cagcagaattcccatccttgtgtagcagagagaatgccatctatacccgaaaatgtcacg
gatcagattaggctgtgggaatcagatctgaacagggttgagaggactcctgcacattat
tatgatgaatttccttctagggacgtcttcgaggctgcttgtgacaacgcacgggagtgg
aacggattgccgtgggaggattcgaaaaccatgcgtctagttgtcaaggcagaaattcac
atgtataattaa
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