KEGG   Corylus avellana (European hazelnut): 132171517
Entry
132171517         CDS       T09426                                 
Name
(RefSeq) DNA mismatch repair protein PMS1
  KO
K10858  DNA mismatch repair protein PMS2
Organism
cave  Corylus avellana (European hazelnut)
Pathway
cave03430  Mismatch repair
cave03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:cave00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    132171517
   03460 Fanconi anemia pathway
    132171517
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cave03400]
    132171517
DNA repair and recombination proteins [BR:cave03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    MutL homologs
     132171517
SSDB
Motif
Pfam: DNA_mis_repair MutL_C HATPase_c_3 HATPase_c
Other DBs
NCBI-GeneID: 132171517
NCBI-ProteinID: XP_059438831
LinkDB
Position
ca2:14996811..15005283
AA seq 922 aa
MEAAETPADSPTAIKPINKGAVHRICAGQVILDLTSAVKELVENSLDAGATSIEIALKEY
GEEWFRVIDNGFGISPNNFKVLALKHHTSKLSDFPDLQSLTTFGFRGEALSSLCALGDLT
VETRTKNESVATHLTYDHSGLLVDEKKTARQIGTTVAVKKLFSNLPVRSKEFRRNIRKEY
GKLISLVNAYALIAKGVRLVCTNTTGKNVKSVVIKTQGSDSLKDNIITVFGMNIFSCLEP
VNICISDNCKVDGFLSKPGQGSGRNLGDRQFFFVNGRPVDMPKVSKLVNELYKGANSRQY
PIAIMNFTVPRRACDVNVTPNKRKIFFSDESSILVALREALQQIYSPSNACYSVNKVEEH
TEEGRELCSPHEKSPLLLKQLSSDGSDIEVIEEHIMEGGTPLRTDENAQQQLHDLEGSIK
NTTDKLMEKNFTLRVHGTKKADNSRQLTGRLDNDTIDQIASSPSRAVDNGITANTDSRSR
TSCVQSSLNKFVTVNKRKHENISTMLSEMPILRNQTLSCHLKNSDSERHDAVSRYPTSND
QVDSSDIMNENEPSRYLRADRIINEIGNPLSSRGSPNDGEPRKEPEDQEKVVPSSTTASV
ASSSKDLKNTPEYLSVSASLNSSGPILDAPRPSSGLQRCSTLQFSFQDLKTKRQQRLSRL
QFTGYKHGNVKMKRCYAAATLELSQLDNEERKAKALAAATTELERLFRKMDFGRMKVIGQ
FNLGFIIGKLDQDLFIVDQHAADEKFNFEHLCQSTILNQQPLLRPLRLELSPEEEVVASM
HMDIIRKNGFTLEEDPYAPPGQHFRLKAVPFSKNITFGVEDVKDLISTLADSQGECSIIG
SYKTDTSDSVCPTRVRAMLASRACRSSVMIGDALGRNEMQKILEHLADLNSPWNCPHGRP
TMRHLVDLTTIYKKSEENDVNS
NT seq 2769 nt   +upstreamnt  +downstreamnt
atggaagcggcagaaactccagccgattctccaaccgcgatcaaacctataaacaaaggc
gcggtccacagaatctgcgccggccaagtgattctggacctcacgtccgcggtgaaagaa
ttggtggagaacagcttggatgccggcgccaccagcatcgaaatcgctctgaaagagtac
ggtgaagagtggttccgggtcatcgacaacggcttcggtatttcgcccaataacttcaag
gttcttgcgctcaagcatcacacatcaaaattatctgattttcctgatcttcagtcattg
accacgtttggattcaggggggaggcattgagttcactctgcgctttaggggatttgact
gtggagactaggacgaagaatgagtcagttgcgacgcatttgacttatgaccattctggt
ttactggtagatgaaaagaaaacagcacgtcaaattggtaccacagttgctgttaagaag
ttgttctcgaatttaccagtgcgaagcaaagaattcaggcgcaatattcgcaaggaatat
gggaagcttatttcattagtgaatgcatatgccttaattgcaaaaggagtccggttagtc
tgcaccaacacaacagggaaaaatgtaaagtctgtggtaattaaaacacaaggaagtgat
tctcttaaagataacatcattacagtatttggcatgaacatcttcagctgcttggagcct
gtgaatatatgtatatcagacaattgcaaagttgatggcttcctttccaagccaggacag
ggtagtggacgcaacttaggagatagacaattcttttttgtaaatggtcgaccagtggat
atgcctaaggtcagcaagctggtaaatgagttgtataaaggtgcaaactcccggcaatat
ccaattgcaatcatgaactttactgtcccaagaagagcatgtgatgtcaatgtaactcct
aataaaaggaaaatatttttttctgatgaaagctccatattggttgccctgagggaggct
ttacaacagatatattccccaagtaatgcctgttactctgttaataaagttgaggagcat
actgaggaaggacgtgagttgtgttctcctcatgagaaatctcctttgttgttaaaacaa
ttatcttcagatggcagtgatatagaagtaattgaggagcacattatggagggtggaact
cctctcagaactgatgaaaacgcacagcagcaattgcatgatctagaaggatcaatcaaa
aatactactgacaaattaatggagaaaaatttcactctcagagtacatggcactaagaag
gctgataacagtaggcaattgactggtcgcctcgataatgatacaatcgatcaaattgct
tcctccccttcacgagcagttgacaatggaattactgcaaatacagattcacgaagtcgt
acaagctgtgttcaatcctcacttaacaaatttgtaactgttaataaaagaaagcatgaa
aatattagtacaatgctatctgaaatgcctatccttagaaatcaaactctttcttgtcat
ttaaagaatagtgattctgaaaggcatgatgcagtttcaagatacccaacaagcaatgac
caggttgatagttctgatataatgaatgagaatgaaccttcaaggtatcttagagcagac
aggatcatcaatgaaattggaaatccactttcttctagaggcagtcctaatgatggagaa
cccagaaaggaaccagaggatcaagagaaagtggtgccttcttctactacagcctcagtt
gcttcatctagcaaggatctcaaaaatacaccagaatatctttcagtttctgcttctttg
aattcttctggtcccatactagatgctccaaggccttcttctggtctgcagagatgttcc
accttgcaatttagttttcaagatttgaagacaaagaggcagcagaggctgtccagattg
caatttactggttataaacatggaaatgtgaagatgaaaaggtgctatgccgctgcaact
ttggagctttctcaactggataatgaggagcgcaaggcaaaggctttagctgcagctact
actgagttggaaagacttttcagaaagatggactttggtagaatgaaggtaattgggcaa
ttcaacctggggtttatcattgggaagttagatcaagatctatttatcgtggatcagcat
gctgctgatgagaaattcaattttgagcatctttgtcaatcaactatcttgaaccaacag
cctttgctccggccactgaggttggagttgtctcctgaagaagaagtggttgcttcaatg
catatggacataattaggaagaatggctttactttggaagaggatccatatgctccacct
gggcaacattttagattaaaagctgtcccgttcagtaaaaacattacttttggagttgaa
gatgtcaaggatctgatttctactcttgccgatagccaaggggaatgctcaataatcggt
agttacaaaacagacacttctgactctgtatgcccaaccagagttcgtgcaatgctggct
tcacgtgcatgcaggtcgtctgttatgattggagatgcgctaggaagaaatgagatgcag
aagatactcgagcatttggcagacctgaattctccttggaattgtccgcatggcaggcca
accatgcgtcatttggttgacttgacaaccatttacaaaaaatcagaagaaaatgatgtg
aactcttga

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