Corylus avellana (European hazelnut): 132171517
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Entry
132171517 CDS
T09426
Name
(RefSeq) DNA mismatch repair protein PMS1
KO
K10858
DNA mismatch repair protein PMS2
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03430
Mismatch repair
cave03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
132171517
03460 Fanconi anemia pathway
132171517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cave03400
]
132171517
DNA repair and recombination proteins [BR:
cave03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
132171517
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
132171517
NCBI-ProteinID:
XP_059438831
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Position
ca2:14996811..15005283
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AA seq
922 aa
AA seq
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MEAAETPADSPTAIKPINKGAVHRICAGQVILDLTSAVKELVENSLDAGATSIEIALKEY
GEEWFRVIDNGFGISPNNFKVLALKHHTSKLSDFPDLQSLTTFGFRGEALSSLCALGDLT
VETRTKNESVATHLTYDHSGLLVDEKKTARQIGTTVAVKKLFSNLPVRSKEFRRNIRKEY
GKLISLVNAYALIAKGVRLVCTNTTGKNVKSVVIKTQGSDSLKDNIITVFGMNIFSCLEP
VNICISDNCKVDGFLSKPGQGSGRNLGDRQFFFVNGRPVDMPKVSKLVNELYKGANSRQY
PIAIMNFTVPRRACDVNVTPNKRKIFFSDESSILVALREALQQIYSPSNACYSVNKVEEH
TEEGRELCSPHEKSPLLLKQLSSDGSDIEVIEEHIMEGGTPLRTDENAQQQLHDLEGSIK
NTTDKLMEKNFTLRVHGTKKADNSRQLTGRLDNDTIDQIASSPSRAVDNGITANTDSRSR
TSCVQSSLNKFVTVNKRKHENISTMLSEMPILRNQTLSCHLKNSDSERHDAVSRYPTSND
QVDSSDIMNENEPSRYLRADRIINEIGNPLSSRGSPNDGEPRKEPEDQEKVVPSSTTASV
ASSSKDLKNTPEYLSVSASLNSSGPILDAPRPSSGLQRCSTLQFSFQDLKTKRQQRLSRL
QFTGYKHGNVKMKRCYAAATLELSQLDNEERKAKALAAATTELERLFRKMDFGRMKVIGQ
FNLGFIIGKLDQDLFIVDQHAADEKFNFEHLCQSTILNQQPLLRPLRLELSPEEEVVASM
HMDIIRKNGFTLEEDPYAPPGQHFRLKAVPFSKNITFGVEDVKDLISTLADSQGECSIIG
SYKTDTSDSVCPTRVRAMLASRACRSSVMIGDALGRNEMQKILEHLADLNSPWNCPHGRP
TMRHLVDLTTIYKKSEENDVNS
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggaagcggcagaaactccagccgattctccaaccgcgatcaaacctataaacaaaggc
gcggtccacagaatctgcgccggccaagtgattctggacctcacgtccgcggtgaaagaa
ttggtggagaacagcttggatgccggcgccaccagcatcgaaatcgctctgaaagagtac
ggtgaagagtggttccgggtcatcgacaacggcttcggtatttcgcccaataacttcaag
gttcttgcgctcaagcatcacacatcaaaattatctgattttcctgatcttcagtcattg
accacgtttggattcaggggggaggcattgagttcactctgcgctttaggggatttgact
gtggagactaggacgaagaatgagtcagttgcgacgcatttgacttatgaccattctggt
ttactggtagatgaaaagaaaacagcacgtcaaattggtaccacagttgctgttaagaag
ttgttctcgaatttaccagtgcgaagcaaagaattcaggcgcaatattcgcaaggaatat
gggaagcttatttcattagtgaatgcatatgccttaattgcaaaaggagtccggttagtc
tgcaccaacacaacagggaaaaatgtaaagtctgtggtaattaaaacacaaggaagtgat
tctcttaaagataacatcattacagtatttggcatgaacatcttcagctgcttggagcct
gtgaatatatgtatatcagacaattgcaaagttgatggcttcctttccaagccaggacag
ggtagtggacgcaacttaggagatagacaattcttttttgtaaatggtcgaccagtggat
atgcctaaggtcagcaagctggtaaatgagttgtataaaggtgcaaactcccggcaatat
ccaattgcaatcatgaactttactgtcccaagaagagcatgtgatgtcaatgtaactcct
aataaaaggaaaatatttttttctgatgaaagctccatattggttgccctgagggaggct
ttacaacagatatattccccaagtaatgcctgttactctgttaataaagttgaggagcat
actgaggaaggacgtgagttgtgttctcctcatgagaaatctcctttgttgttaaaacaa
ttatcttcagatggcagtgatatagaagtaattgaggagcacattatggagggtggaact
cctctcagaactgatgaaaacgcacagcagcaattgcatgatctagaaggatcaatcaaa
aatactactgacaaattaatggagaaaaatttcactctcagagtacatggcactaagaag
gctgataacagtaggcaattgactggtcgcctcgataatgatacaatcgatcaaattgct
tcctccccttcacgagcagttgacaatggaattactgcaaatacagattcacgaagtcgt
acaagctgtgttcaatcctcacttaacaaatttgtaactgttaataaaagaaagcatgaa
aatattagtacaatgctatctgaaatgcctatccttagaaatcaaactctttcttgtcat
ttaaagaatagtgattctgaaaggcatgatgcagtttcaagatacccaacaagcaatgac
caggttgatagttctgatataatgaatgagaatgaaccttcaaggtatcttagagcagac
aggatcatcaatgaaattggaaatccactttcttctagaggcagtcctaatgatggagaa
cccagaaaggaaccagaggatcaagagaaagtggtgccttcttctactacagcctcagtt
gcttcatctagcaaggatctcaaaaatacaccagaatatctttcagtttctgcttctttg
aattcttctggtcccatactagatgctccaaggccttcttctggtctgcagagatgttcc
accttgcaatttagttttcaagatttgaagacaaagaggcagcagaggctgtccagattg
caatttactggttataaacatggaaatgtgaagatgaaaaggtgctatgccgctgcaact
ttggagctttctcaactggataatgaggagcgcaaggcaaaggctttagctgcagctact
actgagttggaaagacttttcagaaagatggactttggtagaatgaaggtaattgggcaa
ttcaacctggggtttatcattgggaagttagatcaagatctatttatcgtggatcagcat
gctgctgatgagaaattcaattttgagcatctttgtcaatcaactatcttgaaccaacag
cctttgctccggccactgaggttggagttgtctcctgaagaagaagtggttgcttcaatg
catatggacataattaggaagaatggctttactttggaagaggatccatatgctccacct
gggcaacattttagattaaaagctgtcccgttcagtaaaaacattacttttggagttgaa
gatgtcaaggatctgatttctactcttgccgatagccaaggggaatgctcaataatcggt
agttacaaaacagacacttctgactctgtatgcccaaccagagttcgtgcaatgctggct
tcacgtgcatgcaggtcgtctgttatgattggagatgcgctaggaagaaatgagatgcag
aagatactcgagcatttggcagacctgaattctccttggaattgtccgcatggcaggcca
accatgcgtcatttggttgacttgacaaccatttacaaaaaatcagaagaaaatgatgtg
aactcttga
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