Corylus avellana (European hazelnut): 132172806
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Entry
132172806 CDS
T09426
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132172806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cave03021
]
132172806
Transcription machinery [BR:
cave03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
132172806
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DUF5679
Motif
Other DBs
NCBI-GeneID:
132172806
NCBI-ProteinID:
XP_059440360
LinkDB
All DBs
Position
ca2:complement(49472518..49484119)
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AA seq
542 aa
AA seq
DB search
MSFDLMLKSSCSGCGSTSDLYGSNCKHMTLCLTCGKTMAENRGKCYDCGATVNRLIREYN
VRASSGSDKNYFIGRFVTGLPNFSKKKTAENKWSLHKEGLQGRQLTDALREKYKNKPWLL
EDETGQSQYQGHLEGAQSATYYLLMMQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM
KNRKKTADGYERWMMKAASNGAAAFGEVERIDDKDNVVGGGRGRRKTTGDDEEGNVSDRG
EEVEEEEAARKNRLGLNKRSGDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDEAVG
NNPEEREELAPEVPAPPEIKQDEDDEDEDNEEEGGLSKSGKELKKLLGRAGGLNDSDVED
DDDDDDMEDEIGLSPVLAPKQKDAPKEEPAEISPVKTVPSGSARGTPSTSKSAKAKRKLN
GEDAKASNGAPSKKVKTENELKPSLKEETVPASKSSVPSKGIPPSSSSSAKTVSTSSAGP
VTEEEIRAVLMQKTPVTTQDLVANFKARLRSPEDKKAFADILRKISKIQRTNGSNYVVLR
DR
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgatctgatgttgaagtcgtcgtgtagtggatgtggatcgacctcggacttg
tacggaagcaattgcaagcacatgactctgtgcttgacctgtggaaaaaccatggccgag
aaccgtggcaagtgctacgactgtggcgccactgtcaatcgcttgattcgagaatacaat
gttcgtgcaagttctggcagcgacaagaattactttattggtagatttgtgactgggttg
ccaaatttttctaagaagaagactgctgagaataaatggtctctccataaagaagggcta
caaggacgccaacttactgatgccttgcgggagaagtacaagaataaaccatggctattg
gaggatgaaacagggcaatctcagtaccaaggtcatcttgaaggtgcccaatctgctaca
tactacctactaatgatgcaagggaaggagtttgttgctattcctgctggttcttggtac
aactttaacaaggttgcacaatataaacaacttacgctggaggaagcagaagaaaagatg
aagaacaggaaaaagactgcagatggatatgaaaggtggatgatgaaagctgcaagtaat
ggagctgctgcatttggtgaagtggagaggattgatgacaaggataatgttgtgggtggt
gggagagggcgtagaaaaacaactggtgatgatgaggaaggtaatgtttcagatagaggg
gaggaggttgaagaagaagaggcagctaggaagaatagattgggacttaacaagagaagt
ggtgacgatgatgaggaaggtccgaggggtggtgatcatgatttggatgatgatgatatt
gagaagggtgatgattgggagcatgaagaaattttcactgatgatgatgaagccgttggt
aataatcctgaggaaagggaagaattggccccagaagttcctgctcctccagaaattaag
caggatgaagatgacgaggatgaagataatgaagaggagggcggactgagcaaatctgga
aaagagttgaagaagctgcttgggcgagccggtggccttaatgattcagatgttgaggat
gatgacgacgacgacgatatggaagatgagattggcctttctcctgtgctagctccaaag
cagaaggatgcacccaaagaggaacctgctgaaatcagtcctgtcaaaacggtgccttct
ggatccgctcggggaaccccatcaacctctaagtctgcaaaggcaaagagaaaattaaat
ggcgaagatgcaaaagcatctaatggtgcaccttcaaagaaggtgaagacagaaaatgaa
ttaaaaccttctttgaaagaagaaactgtgcctgcttctaagagtagtgtgccttcaaaa
ggcataccaccatcatcatcatcatcagcaaaaactgtatcaacatcatctgctgggcct
gtcactgaagaagaaatcagggctgttttaatgcaaaagacaccagtgacgacgcaggat
cttgttgctaattttaaggctagactaagatccccagaggacaagaaagcctttgcagac
atccttaggaaaatttctaagatacagaggacgaatgggtcaaactatgttgttttgagg
gacagatga
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