Corylus avellana (European hazelnut): 132172942
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Entry
132172942 CDS
T09426
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132172942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132172942
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
132172942
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Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
OB_HELZ2
Rrp44_S1
CSD2
OB_RNB
Motif
Other DBs
NCBI-GeneID:
132172942
NCBI-ProteinID:
XP_059440488
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All DBs
Position
ca2:complement(318618..>329693)
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AA seq
929 aa
AA seq
DB search
TFVKKTRGGKVNKQVREHYLRDDIYCGAPICKVCDSSAARLSPSASTILIVDTNVVLNQI
DLLENSAIDDVVMLSIVLDEVKNKNMSVYNRVRALCSNSLRRFFVFANEHHKDTFVKEMN
KESKNDRNDRAIRVAAQWYQSHLGGAAQVLLITNDRENKRKAIEEGISAETIESYVKSLV
RPDLLDLLVQPSSEDVDMQEVEDLRPSKRKVIYTEHKPMSEITSGLHRGIYHQGKLRVNR
YNPFEAYIGSESIGDEIIIYGRTNMNRAFDGDIVAVELLPQDQWHEEKSLSIADEEDVEE
DVHLAPSSADDAPRTAILVQGSAGDTNAVSSRPSGRVVGIIKRNWHSYCGSLEPMPMPAG
SGGTAHALFVSKDRRIPKIRIQTRQLENLLDKRIIVAVDSWDRLSRYPSGHYVRTIGEIG
DRDTESEVVLIENDINSRPFSSQVLSCLPPLPWSVSSEDLANPIRQDLRHLCAFSVDPPG
CKDIDDALHCTSLPNGNFEVGVHIADVTNFVHPGTPLDDEAARRGTSVYLVERRIDMLPK
HLTEDICSLRADVERLAFSVIWEMTPEAEIISTRYTKSVIKSCAALSYIEAQARMDDSRL
VDPLTTDLRNMNGLAKIMRLRRIDRGALTLASAEVKFQIDTETHDPLDIGMYQIREANQM
VEEFMLAANVSVAQKILKHFPLCSLLRRHPIPTREMLEPLLRTAAAVGINLDVSSSKALA
DSLDHAVGDDPYFNKLIRILATRCMTQAVYFYSGDLSPPEYHHYGLASPLYTHFTSPIRR
YADVIVHQLLAASLEIYKLPSIFQDRPQLTSVADNLNYRHRNAQMASRASVELHTLIYFR
KRPTDTEARVVKIRANGFIVFVPKYGIEGPVYLTPRSEKGSGEWYVDEQQQKIKKMDGSV
SYNVLQTVQIHMEVVEPQPNQPKLQLTLI
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
acattcgtcaagaaaaccagaggcggcaaagtgaacaagcaagtgagagagcactatctc
agagacgatatttactgtggagctcccatctgcaaagtgtgcgattcctctgctgctcgc
ttgagtccttctgcttccaccattctcattgtcgacacaaatgttgttctcaatcagatt
gatttgcttgagaactcagcaattgatgatgttgtcatgctatcgatcgtgctggacgag
gttaagaacaagaacatgtcggtgtacaatagagttagagctctctgcagcaattccttg
aggaggttttttgtgtttgctaatgaacaccacaaggatacttttgtcaaggaaatgaat
aaagaaagtaaaaatgatcgtaatgacagagcaattcgggtggctgctcaatggtatcag
agtcatcttggtggtgcagctcaggttttacttattactaatgatagggagaataagagg
aaggctatagaagagggcatttctgcagagacaattgagtcatatgtgaaatcattggtt
cgacctgatttgcttgacttgctagtgcaaccttcatcagaagatgttgacatgcaggaa
gttgaagatttgagaccttccaagaggaaagtcatttataccgagcataagcccatgtct
gagattacttctggattgcatcgtggaatataccatcaaggaaaacttcgtgttaaccgt
tataatccatttgaagcttatatcgggagtgagagtattggtgatgaaataattatttat
gggcgtacaaacatgaatagggcttttgatggtgacatagtggcagtagaacttctgccc
caagatcagtggcatgaggagaagtctctatctatagcagatgaagaggatgtggaagaa
gatgttcatctagctccaagcagtgctgatgatgctcctagaactgcaattctagtgcag
ggttctgctggagacacaaatgctgtctcatctcgtccatccggccgtgttgttggtatt
ataaaacgtaactggcattcttattgtggatctttagagccaatgcctatgcctgcaggt
agtggtggtacagcccatgccttatttgtctccaaagatcgcagaatcccaaagattcgg
atccaaacccggcagcttgaaaatcttctcgacaagagaattattgtggcagttgattct
tgggaccgtctatctcgatatccttctggccactatgtacggaccataggagaaataggt
gacagagatactgaaagtgaggtggtcttgatagagaatgatataaactcaagaccgttt
tcttctcaagttctgtcatgcttgccaccattaccatggtctgtgtcttctgaagatttg
gcaaatcctattaggcaggatttgcgacatttatgtgcctttagcgtggatcctccagga
tgcaaggatattgatgatgcactgcactgtacctctcttccaaatggaaattttgaagtt
ggagttcatattgctgatgtaacgaattttgtgcaccccggcaccccacttgatgatgag
gctgcacgaaggggcacatctgtgtaccttgttgagcgtcgtattgacatgcttccaaaa
catcttacagaagatatatgttctcttcgagctgatgtggaaaggctagcattctctgtt
atttgggagatgacacctgaagcagagattatttctacaagatacacaaaaagtgttata
aaatcttgtgcagcattgtcttatattgaagctcaggcaaggatggatgacagtcggttg
gtggatccattaaccacagatttgagaaatatgaatggtctagcaaagataatgaggttg
aggcgtattgatagaggagccttaactcttgcttctgctgaagtcaagtttcaaattgac
actgagactcatgaccctcttgatattggtatgtaccagattcgggaagcaaaccaaatg
gttgaggagtttatgcttgctgctaatgtttcagttgcacaaaaaatcctcaaacatttt
cctttgtgttcactgctaaggcgtcatcctattccaaccagggagatgcttgaacctctg
ctacgcacagctgctgctgttggtatcaacttggatgtttcttcatcaaaagcactggct
gattcacttgatcatgctgtgggtgatgatccatactttaataagctgatcaggatattg
gcaaccagatgcatgacacaggcagtttatttctatagtggggatctcagccctccagaa
tatcatcattatgggcttgcatcacctctgtatactcatttcacttcacctataaggaga
tatgctgatgtcattgtacaccaattgcttgctgcttctttagagatatacaagcttcca
tcaatattccaggacagaccccaacttactagtgttgctgacaatttaaattatcgacat
agaaatgctcagatggcgagcagggcctcagtagagctgcatactcttatctacttcaga
aaacggcccacagacaccgaggccagagtagtgaagataagagccaatggctttattgta
tttgtgcccaagtatggtattgaagggcctgtgtacttgacaccaagaagcgagaagggc
agtggagaatggtatgtcgacgagcaacagcagaagattaaaaagatggatggtagcgtt
tcttataatgttctgcagacagtacaaattcacatggaggttgtggagccacagcccaac
cagccgaaactccagctcacccttatttag
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