Corylus avellana (European hazelnut): 132173442
Help
Entry
132173442 CDS
T09426
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132173442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132173442
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132173442
mRNA degradation factors
5'-3' decay
Decapping complex
132173442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
PEP5_VPS11_N
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
DUF4197
DUF1297
Motif
Other DBs
NCBI-GeneID:
132173442
NCBI-ProteinID:
XP_059440928
LinkDB
All DBs
Position
ca3:39378572..39386929
Genome browser
AA seq
1389 aa
AA seq
DB search
MASSGNPNQQPQPIATFDMQSFFKPTNPSPPQPPNPPNLNTSPPFPPPSGPYSYPPQSAP
FQPSPYHHYPYHPQPQNAPLHHQRSLSYPTPPLQPPISSPTNPNPNSGARLMALLNPNQP
PPPAPPNPPSSPAIMNLMPPPPLRMPSSKLPKGRHLGGDRVVYDVDVRLEGETQPQLEVT
PITKYQSDPNLVFGRQIAVNKSYICYGLRQGNIRVLNINTALRSLLRGHAQRVTDMAFFA
EDVHLLASVGIDGRVYVWKISEGPDEEEKPQITGKAVVAIQITGDTYQKKITGEEEPAHP
RVCWHCHKQEILVVGIGRRILRIDTIKVGKNEVFSAEEPLKCHIDKVIDGVQLVGNHDGE
VTDLSMCQWMTTRLVSASIDGTVKIWEDRKFAPLAVFRPHEGQPVCSSTFLTAPHRPDHI
ILITAGSLNREVKTWALTSEEGWLLPSDAESWKCTQTLELKSTAEPRVEEAFFNQVAALS
KAGLLLLANAKKNAIYAVHLDYGPNPAATRMDYIAEFTVTMPILSFTGTSDILPHGENII
QVYCVQTQAIQQYALDLAQCLPPPLEYMGLEKSDSNVSRDATSAEGFAASDPSGSKPMEM
LPLVGSAPKQNIQVSSSESATAARYPVSSGSAEAATSKEINSLSTEYKPVALTPVTSDAD
GVSVVSPPLPLTPRLSRELSGFRSTTSNFEPAPPLSIHVGDQPVNDYSVDRQVDTIRANF
SDVPSLDDESRNDKTKATSNAPDDLSSVLSPHLMFKQPTHLVTPSELKGNSSSGSANVID
GKSEGEASIQDVIANSDAGNAEVEVKVVGETRSTQNDEFGPQGDSQKNSLENKEKYFCSQ
ASDLGIVMARECCAISMEPYIMEEARQVDGVNVTEPLAEPPNADEDEVHDSAKNVPGKVS
ESSTSTPVLPSSTPNTKGKKQKGKNSQASRPSSPAPSAFNSQDSLNEPSGSTSLPSAEAP
FSQILAMQEMLNQLMIMQKDMQKQMTTMISVPVSKECKKLETNLGRSMEKAVKANTDALW
ARFQEENAKNEKLLRDRTQQITSLIGNFMNKDLPMLLEKAVKKEMAAVGPAVVRSISPAI
EKIVSSAIVESFQRGVGDKAINQLEKSINVKLEATVARQIQAQFQTSGKQALQDALKYSL
ETSVIPAFEMSCKAMFEQVDATFQKGMVEHSTAAKQHFESAHSPLAHALRDAINSASTVA
QTLGGEVLEGQRKLLSLAAAGANSSAVNPLVSQLSNGPLGGLHEKVEVLVDPTKELSRLV
SERKYDEAFTAALQRSDVSIVSWLCSQVDLRGILSVVPLPLSQGVLLSLLQQLACDISND
SPRKLAWMTDVANAIDPTDPMIVVHVRPIFDQVYNILNHQRNLPTITGAELSSIRLLMHV
INSMLMTCK
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtctggtaacccaaaccagcaaccacagcccatcgccaccttcgacatgcaa
agcttcttcaaacccacgaatccttcaccgccgcaaccaccaaaccctccaaatctaaac
acttcgcccccatttccgcctccctctggcccctactcctacccgccccaatctgcaccg
tttcaacccagcccataccaccactacccttaccatcctcaaccccaaaacgcacctttg
caccaccagcgctccctctcctaccccacccctcctctccaacctccaatctcttcgccc
actaaccctaaccctaactctggggcccgcctcatggcacttctcaaccccaatcagccc
cctccgccggccccacccaaccctccctcctcgccggcgatcatgaatctgatgccgccg
ccgcctcttcggatgccgagcagtaagctccccaagggccggcacttgggcggcgaccgc
gtggtctacgacgtcgacgtgaggctggaaggggagacccagccccagctggaggtcact
cccatcaccaagtaccagtccgatccaaacctcgtcttcggccgccagattgccgtcaac
aagtcctatatctgctacggtttgcgccagggcaatatccgcgtcctcaacatcaacacc
gctttgcgctctctgcttcgcggtcacgcccagagggtcacagacatggctttctttgct
gaggatgttcaccttttggctagtgttggcatcgatggacgggtttatgtgtggaagatt
tctgaaggccctgatgaagaagagaagcctcaaattacaggaaaagctgttgttgccatt
caaattacaggagatacttatcaaaaaaaaattacaggagaggaggaacctgcgcatcca
cgagtttgttggcactgccacaaacaagaaattttggtagtggggattggaagacgaatt
ctgagaattgatactatcaaagttggaaagaatgaagtgttttcagcagaagaacctctc
aaatgtcatattgacaaggtcattgacggggtccagcttgttggtaatcatgatggagaa
gtgactgatttgtcgatgtgccaatggatgacaacccgtttagtttctgcttctattgat
ggaacggtaaagatctgggaagatcgcaagtttgcaccactcgcagtattcagaccacat
gaaggccagcctgtttgttcgtcaacatttttaactgctccccatcggccagatcacatc
atacttatcacagcgggatcactaaatcgagaagtgaaaacgtgggcattgacaagtgaa
gaaggctggctactgcctagtgatgctgaatcatggaagtgtacccagacattggagttg
aagagtacagctgaacctcgagttgaggaggcatttttcaatcaagtcgcagctttgtcc
aaagcaggccttctcttacttgcaaatgcgaagaagaacgctatatatgctgtacactta
gactatggtcctaatccagcggcaacccgcatggattacattgctgagtttacagtcacc
atgcctattttgagttttacagggacaagtgatatattacctcatggtgaaaatattatt
caggtttattgtgtccagacacaagctattcagcaatatgctttggacttggcccagtgc
ttgccaccaccactggagtacatggggttagaaaagtcagattcaaatgtttcgcgtgat
gcaactagtgcagaaggatttgctgcctcggacccatctggaagtaaacctatggagatg
ctgcccttagttggttcagcacccaaacaaaacatacaagtaagtagctctgagagtgca
actgcagcgaggtatcctgtaagctctggttctgctgaggctgcaacttctaaagaaatt
aacagtttgagtacagaatataaacctgttgcactgacaccggtaactagtgatgctgat
ggtgtttctgtcgtgtcaccacctcttcctttgactcctaggttgtctagagagctttct
ggttttaggagtacaacaagtaactttgagcctgctccccctctcagtatccatgttgga
gaccaaccagttaatgactattcggttgacaggcaagtggacaccattcgtgcgaacttt
tctgatgtgccttcattggatgatgagtctaggaatgataagacaaaagctacgtcaaat
gcaccagatgatttatcatctgtgcttagtcctcatctcatgttcaaacaaccaactcat
ctggtaactccctctgagttaaaaggcaattcatcctctggaagtgctaatgttattgat
ggcaagagtgagggagaggcaagcatccaggatgtgattgccaacagtgatgcaggtaat
gctgaggtggaggtgaaagtagttggtgaaacaagatctacccaaaatgatgaatttggc
cctcagggagattctcaaaaaaattcattagaaaataaggaaaaatacttctgctcgcaa
gcctcagatcttggtattgtgatggcccgagaatgctgtgctatatcaatggaaccttat
atcatggaggaagctcggcaagtcgatggtgtcaatgtaacggaaccactggctgaacct
cctaatgctgatgaggacgaagtccatgactccgcaaaaaacgtgcctgggaaggtttct
gagtcatctacgtccacaccagtcctaccgtcatccacaccaaatacaaaaggaaaaaag
cagaaggggaaaaattctcaagcttcacgtccatcttccccagctccaagtgcttttaat
tcacaagattctttgaatgaaccaagtggcagtacgagtcttccctctgcagaagctcct
ttttctcaaattttggccatgcaggagatgcttaatcagctcatgataatgcaaaaagat
atgcagaagcagatgacaacaatgatatctgttccagttagcaaagaatgtaaaaaacta
gagacaaacctggggcgtagtatggagaaagctgtcaaggccaatacagatgctttgtgg
gcgcgttttcaagaagagaatgcaaaaaatgagaagttattacgagaccgtacacagcaa
atcaccagtttgattggtaactttatgaataaagacttaccaatgttgttagaaaaggca
gtgaagaaggaaatggctgcagtggggccagcggtagttcgctcaatatctccagctatt
gagaagatagtatcttcagctattgttgagtcttttcagagaggagtcggtgataaggca
attaaccaactggagaaatctatcaatgtaaaacttgaagctactgttgctaggcaaatc
caagcacagtttcaaacttctggcaaacaagctcttcaggatgctttaaaatatagtttg
gaaacgtcagtgatccctgcctttgagatgtcatgtaaagccatgtttgagcaagtagac
gccacatttcagaaaggaatggttgaacattcaactgcagctaagcaacactttgagtct
gcccattctccattggcacatgctctaagggatgccattaattcagcgtcaacagtggct
caaaccttgggtggagaagtgcttgagggtcaaagaaagctattatctcttgctgctgct
ggagcaaactcaagtgcagtcaatcccttggtctcccaactgagcaatggacccttgggt
ggtctccatgagaaggttgaggtgctggttgatccaacaaaggagttatcgagattggta
tctgaacgtaaatatgacgaggctttcactgcagccctacaaagaagtgacgtgtccatt
gtgtcctggctatgctcacaggttgatctacggggaatcttgtcagtggttcctctccca
ttgagccaaggagtactgctttctcttttgcagcaactagcctgtgatatcagtaacgac
tcaccccgaaagcttgcttggatgaccgacgtggctaatgccatagacccaacagaccca
atgattgtggtgcatgtgcggcccatctttgatcaagtctataacatactcaaccatcag
cgtaacttgcctacaattactggtgctgaactttcaagtatccgtcttctgatgcatgtc
atcaattccatgctcatgacctgtaaatga
DBGET
integrated database retrieval system
