Corylus avellana (European hazelnut): 132173710
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Entry
132173710 CDS
T09426
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 27-like
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
cave
Corylus avellana (European hazelnut)
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cave03041
]
132173710
03009 Ribosome biogenesis [BR:
cave03009
]
132173710
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132173710
Spliceosome [BR:
cave03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
132173710
Ribosome biogenesis [BR:
cave03009
]
Eukaryotic type
90S particles
Helicases
132173710
Pre-60S particles
132173710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
AAA_22
TLC
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
132173710
NCBI-ProteinID:
XP_059441273
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All DBs
Position
ca3:<25406862..25412618
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AA seq
581 aa
AA seq
DB search
MIKQAVQNYTLLEDEKKRKRKRNEHNKKTIAAEQADPQKQEEEEEAAVEEGKEEKKKKKK
KKEEGVREDGGGGRSDELKKVKSGVGGSGIMTTESFGSLGLSEPTFNAIKDMRFQHMTQI
QARAIPPLLLGKDVLGAARTGSGKTLAFLIPAVELLYHTRFTPRNGMGVVVICPTRALAI
QTHAVAKDVLKYHSQTLGLVIGGSARRGEAERLVKGVNLLVATPGRLLDHLQNTKGFIYK
NLKCLIIDEADRILEANFEEEMKQILKLLPQNRQTALFSATQTQKVEDLARLSLKNAIYI
DVDDGRNKVTNEGLQQGYCVVPSAKRFILLYSFLKRNLSKKVMFFFSSCNSVKFHSELLR
YIQLDCLDIHGQQKQLKRTTTFFNFCKAEKGILLCTDVAARGLDIADVDWIVQYDPPDEP
KEYIHRVGRTARGEGAKGNALLFLIPEELQFIRYLKAAKVPVKEYEFDQKKMANVQSHLE
NLVANNYYLNKSAKEAYRSYILAYNSHSMKEIFDVHRLDLQAVASSFCFSNPPKVSVNID
SGASKFRRKIRKVDGKRHGFSESSPYGRQGGGDSKRQSVRH
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaacaggcagtgcaaaactacactttgctagaggacgaaaagaagaggaagcgc
aagagaaatgagcataacaagaaaacaattgccgcagagcaagcggatcctcagaagcaa
gaagaagaagaagaagcagcagttgaagaaggtaaggaggagaagaagaagaagaagaag
aagaaggaggagggagtgcgagaggatggtggtggtggtcgcagtgacgaattgaagaaa
gtgaagagtggtgttggagggtctggaattatgaccacggagtcctttggatctttggga
ttatctgaacccactttcaatgctattaaggatatgcgatttcagcatatgactcagatt
caagccagggcaattccaccacttttgcttggcaaagatgttcttggagctgcaaggaca
ggttctgggaaaactcttgcttttctaataccagctgtggaattgttatatcacacccgt
tttactcctcgtaatggaatgggagtggtcgtaatttgcccaactagggcgcttgcaata
cagacccatgctgtggcaaaagacgttctcaagtaccactctcagactcttggtttggtt
attggtggttcagctagaagaggagaagcagagcgtcttgtgaaaggagtgaatttatta
gtagcaacccctggtcgacttcttgaccatctgcaaaataccaaggggttcatttataaa
aatttgaagtgcctaataatcgatgaagctgaccggatactggaagcaaactttgaggaa
gaaatgaagcagattcttaagcttctaccacagaataggcaaacggctttattttcagcc
acccaaactcagaaggttgaggatcttgcacgcttatcgttgaaaaatgctatctatatt
gatgtggatgatggaagaaataaggtcactaatgaagggctgcagcaaggctattgtgtt
gtccccagtgccaagagatttattcttctatattccttcttgaagaggaacctgtcaaag
aaagtgatgttcttcttctcttcatgtaactcagtcaaattccactctgaactgctgaga
tatattcagttggattgccttgatatccatggacagcaaaaacagctgaaaaggacaact
acattttttaacttctgcaaagcagagaagggaatcttgctatgtaccgatgttgctgct
cgtgggcttgatattgctgacgtggactggattgtgcagtatgatcctccggatgaaccc
aaggaatacattcatagggttggtcgaacagctcgtggggaaggtgcaaaaggaaatgct
ctgcttttcctgattcctgaagagttgcaatttattcgctatctgaaggcagcaaaagtc
cctgttaaagagtatgaatttgatcaaaagaagatggctaatgtgcagtctcacctggaa
aatttggtagccaataactattacttgaacaagtcggctaaagaagcatacagatcctac
atattagcatataactctcactctatgaaagaaatctttgacgttcaccgccttgatttg
caggctgttgccagttctttctgtttttcgaacccaccaaaggtgagtgtgaacatagat
agtggcgcctcaaagttcagaaggaaaatccggaaagttgatggaaagcgacacggtttc
agtgagagcagcccttacggaaggcagggaggtggagattctaagcgacaatctgtgagg
cattag
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