Corylus avellana (European hazelnut): 132173776
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Entry
132173776 CDS
T09426
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132173776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132173776
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
132173776
mRNA degradation factors
5'-3' decay
Decapping complex
132173776
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
132173776
NCBI-ProteinID:
XP_059441361
LinkDB
All DBs
Position
ca3:19971541..19986471
Genome browser
AA seq
821 aa
AA seq
DB search
MDASSAGGSVEEPPNRRDLKQFGDNPTVFDASQYAFFGKDVVDEVELGGLEDEQVSLPAV
GIDEEDFMYNIEEGEDLQSLSDIDDLASTFSKLNTVVSGPRSTGVIGGLGSREGSSAAEW
ALGEDFPYWLDPHGFDSESTQEGKRWSSQPSGRLAESKPLYRTSSYPEQQQQPHHQHHQP
FSSEPILVPKSFTSYPPSGGRSPLGSPNHHSDHLNIPYIAGGPEMALSSPNLSSFSNSRP
QLVGLHQGSNFGGNVPQFSHNVSVSSRPPNQWVNQSNFYPGDHSSLVNNLLQQRLPHQNG
LMPPQVMPQPQPQQHRLHHPVQPSFGHMSGYQSQLFNPHLSPGPPLMSKFDMLGLSDMMR
DQRPKSAQKGRLNLRFSHQGFDTSSHKNDSGWPQFRSKHMTSDEIESILRMQLAATHSND
PYVDDYYHQACLARKSAGAKLKHHFCPNQLRDLPPRARANAEPHAFLQVDALGRVPFSSI
RRPRPLLEVDPPNPSVAGSNEQKALEKPLEQEPMLAARVAIEDGLCLLLDVDDIDRFLQF
NQLQDGGAQLRRRQQVMLEGLATSLQLVDPLGKNGNTVGLAHKDDLVFLRLVSLPKGRKL
LARYLQLLFPGGELMRIVCMAIFRHLRFLFGGLPSDSAAAETTDNLARVVSLCVRDMDLS
AISACLAAVVCSSEQPPLRPLGSSAGDGASLILKSVLERATELLTDPHAASNYNITNRSL
WQASFDEFFGLLTKYCINKYDSVMQSLLMQSPPNVAAIGSDAARAISKEMPVELLRASLP
HTDDLQKKMLLDFAQRSMPIVGFNSNGGGSAGRMNSESVLS
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgtctagtgctgggggtagtgttgaagagcctcccaaccgtagagatcttaag
caattcggagacaatcccacagtatttgatgcatcacaatatgcgttctttggtaaagat
gttgttgatgaagttgagttggggggcttagaagatgagcaggtcagtttgcctgcagtg
ggcatagatgaggaggattttatgtacaatatagaagagggggaggatttacaatctctg
tctgatattgatgatcttgctagtactttctcaaagttgaacacggttgttagtggacca
agaagcactggagttattggtggtttgggatccagagaaggttcatctgctgctgaatgg
gcattaggggaggattttccttactggttggatccacatggatttgactctgagagcact
caggaaggcaaacggtggtcatcacagccatctggtcgccttgcggaatcaaagcctttg
tacagaacgtcttcataccctgagcagcaacaacagcctcatcaccaacaccaccaaccc
ttctccagtgagccaattcttgtgccaaaatctttcacttcatatcctccctctggtggc
aggtctcccttgggttcaccaaatcatcactcagaccacctgaatatcccatatattgct
ggtggacctgagatggcgttatcttcaccaaatctgtcttctttctcaaattctcgacct
cagttggttggtttgcatcagggttcgaattttggtgggaatgtgcctcagtttagtcac
aatgtctctgttagtagccgaccaccaaaccaatgggttaatcagtccaacttctatcct
ggagatcattcgagtcttgtcaacaatttattgcaacaacggttacctcatcagaatgga
ttaatgccgccacaagtgatgccacaaccacagccgcagcagcataggctacatcatcct
gttcagccatcatttggccatatgtcggggtatcaatcgcaactatttaatccccatctt
tctccagggccacccttgatgagcaagttcgatatgctaggcctttccgatatgatgaga
gatcaaagaccaaaatcagctcagaaagggagactgaatctccggttttcccatcagggt
ttcgataccagtagccacaagaatgatagcgggtggccacagtttagatcaaagcatatg
acatctgatgaaatagagagtatccttagaatgcagcttgctgcgacacatagtaatgac
ccgtatgtagatgactattatcaccaggcttgtcttgcaagaaaatctgctggggcaaaa
ttgaaacatcatttctgcccgaatcaactgagggatcttcctcctcgagcccgtgctaat
gctgagccacatgcttttctccaagttgatgctcttgggagggttccattttcttcaatt
cgtaggcctcgcccccttcttgaagttgaccctccaaatccttctgttgctggcagcaat
gaacaaaaagctttggagaagcctcttgaacaagagccaatgcttgcagctagagtggca
atcgaggatggtttatgtcttcttcttgatgtagatgatattgaccgtttcttacagttc
aatcagctccaagatggaggggcccagttgagacggaggcagcaagtcatgctggaaggg
ttggcaacatcgcttcaactggttgacccactaggcaaaaatggcaacacagttgggctt
gctcataaggatgatttggtcttcttacggttggtttctcttcccaagggccgtaagctc
cttgcaaggtatcttcagcttctctttcctggtggcgagctcatgcgaatagtttgcatg
gcaattttccgtcatttaaggttcttatttggtggccttccctctgattcagcagcagca
gaaacgacagataatcttgcaagggttgtttcactgtgtgtccgtgacatggacctcagt
gcaatcagtgcctgtttagcagcagtagtttgttcctcagagcagcccccacttcgtcct
cttggaagctcagctggagatggagcttccctgattctaaaatctgttcttgagcgggca
acagagcttttaactgatcctcatgctgctagcaactataacataactaatcggtcgctt
tggcaggcctcttttgatgaattctttggccttctcaccaagtactgcataaataaatac
gatagtgttatgcaatccttgcttatgcaatctccaccaaatgtggctgctattgggtca
gatgcagccagagctattagtaaggaaatgccagttgagctgttacgtgcaagtcttcct
cacactgatgacctccaaaaaaagatgctgttggattttgcacagcgctctatgcctata
gttggatttaacagcaacggtggggggagtgctggtcgcatgaattccgagtcagtgctg
agttga
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