Corylus avellana (European hazelnut): 132173840
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Entry
132173840 CDS
T09426
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03030
DNA replication
cave03420
Nucleotide excision repair
cave03430
Mismatch repair
cave03440
Homologous recombination
cave03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
132173840
03420 Nucleotide excision repair
132173840
03430 Mismatch repair
132173840
03440 Homologous recombination
132173840
03460 Fanconi anemia pathway
132173840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cave03000
]
132173840
03032 DNA replication proteins [BR:
cave03032
]
132173840
03400 DNA repair and recombination proteins [BR:
cave03400
]
132173840
Transcription factors [BR:
cave03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
132173840
DNA replication proteins [BR:
cave03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
132173840
DNA repair and recombination proteins [BR:
cave03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
132173840
MMR (mismatch excision repair)
132173840
DSBR (double strand breaks repair)
HR (homologous recombination)
132173840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
zf-CCHC
DUF223
RADX
zf-CCHC_3
DUF936
NGO_1070-like
BRCA-2_OB1
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
132173840
NCBI-ProteinID:
XP_059441457
LinkDB
All DBs
Position
ca3:10988115..10993163
Genome browser
AA seq
876 aa
AA seq
DB search
MAINLTEGAIMMMCRGELKAEEVKPVLQVIDVKQVSTQAQQHSNTERFRVVLSDGSHHQQ
GMLATQMNALVKDGRLQKGSVVQLTQFVCNVVQNRMIIIIVDLDLILEKSDLIGEPVSAP
RTGPVHPSAGQPGTGTGNLQSFPGSSRADGVVNKPNMAGISMEHPRTIQSHGNAYSNNSD
AGGYAASNMPYPKAEPSAGFPGSVSLGGSYSGQNMSFRSPRPEAPRPPLNTSYRQPQPAY
QQPPPMYTNRGPVARNEAPPRIIPIAALNPYQGRWTIKVRVTAKGELKHYNNPRGDGKVF
SFDLLDSDGGEIRATCFNAVADQFYNQIEAGKVYLISKGSLKPAQKAYNHLPNDHEILLE
STSIVQPCFDEDSSIPQQQFHFRPISDIEGMEKNSIVDIIGIVSFISPPASIMKKDGTET
QKRTLHLKDMSGRSVELTIWGNLFNAEGQRLQNMCDSGVFPVLAVKSGRVNEFNGKALGT
LSTSQLFIEPNFPETHGLKEWFDKEGRNIQSVSISRETTSMGRTDFRKTISQIKDEKLGT
SEKPDWITVSATISFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCERCDQSIEECD
YRYILQLQIQDHTGLTWVTAFQECGEEIVGVPAKTLYFLKYEEQDDDKFGEIIRKVLFTK
YIFKLKVKEETFSDEQRVKSTVVKAEKVNFASESRFLLDLVEKLKAGDYSYFSSNVPYPK
AEPSSTGMNNTIVGNIGIRQPTPPMVNYTGNSNSPGKVFGASSHHVGQYGNQYNSSMAAA
TGTPGPYLLCNSCGGTGHSSTNCPSIMNGPGQSLGGQGYANRVSSGPGVGGSSSECFKCH
QTGHWARECPGPSTVPPAYGSSGRYGNVPKQQLGGF
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcaatctgacggagggtgcgataatgatgatgtgccggggcgagttgaaggcc
gaggaggtgaagccggtgctccaggtgatcgacgtgaagcaggttagcactcaggcgcag
cagcacagcaacactgagaggtttagggttgtgctttccgacggctcgcaccatcagcag
ggaatgctcgcaacgcagatgaacgctcttgtcaaggatggcaggttgcagaagggctcc
gtcgtccagttaacgcagttcgtctgcaatgtcgtccagaaccgcatgattattatcatt
gtcgatttggatttgatacttgaaaaaagtgatcttattggagaacctgtatcagcacca
aggactgggcctgtacatccctccgctggtcaaccagggacaggaactgggaatctccaa
tcttttcctggaagttcacgtgctgatggtgtggttaataaaccaaacatggccggcata
tctatggagcatcctagaacaattcaatcacatggcaatgcttattctaataattccgat
gcaggaggatatgctgcatcaaatatgccttaccctaaagcagagcctagtgctgggttt
cctggatcagtgtcactgggtgggtcatatagtggtcagaacatgagtttccgcagtcct
aggccagaagctccgcggccgcctctaaatacctcttaccgtcaacctcagcctgcatat
caacagccacctccaatgtatactaacagaggaccagtagctagaaatgaagctccccct
aggataattcccattgctgctctgaatccataccagggcaggtggacaatcaaggttaga
gttacagcaaaaggagaacttaagcactacaataatcctcgtggtgatggtaaagtattc
tctttcgatcttcttgattctgatggtggagaaattcgggctacttgttttaatgctgtg
gctgatcaattctacaaccagattgaggctggtaaggtttatctgatttccaagggaagt
ttaaaacctgctcaaaaagcttacaaccatctcccaaatgatcatgaaattctcttagag
agcacatcaatagtacagccttgcttcgatgaagacagctcaattccacagcagcagttt
cacttccgacccataagtgatattgaaggcatggagaagaacagcattgtggatataatt
ggtattgtgtcttttatcagcccacctgcttcaataatgaaaaaagatggtacggagact
cagaagagaaccctacacctgaaggacatgtctggccgaagtgtagaattaactatttgg
ggaaaccttttcaatgcagaaggacagagactgcaaaatatgtgtgattcgggggttttc
cctgttctagcggtgaaatctggtagagtcaatgagttcaacgggaaggcactggggact
ctctctacatctcaattatttatagagccaaattttcctgagactcacggactgaaagaa
tggtttgacaaggaaggaaggaacatccaatctgtgtctatttccagggaaacaacaagt
atgggtaggacagattttcgaaagactatatctcaaattaaagatgagaagctggggacg
tctgagaagccagattggatcactgtcagtgcaaccatttcattcataaaggttgacaat
ttctgctacactgcatgccctattatgattggcgatcggcaatgcaacaagaaggttaca
aataatggggatggaaaatggcggtgtgaaaggtgtgatcagtccattgaggaatgtgac
tacaggtatatactccagctccagatacaagaccacactggcttaacatgggtaactgct
tttcaggaatgtggtgaggagatcgtgggtgtacctgcaaaaactctgtattttttgaag
tatgaagagcaagatgatgataaatttggagaaatcattcgtaaggttctatttactaaa
tatatattcaagttgaaagtaaaggaggagacattcagtgatgaacagcgtgtgaagtca
acagtggtcaaagcagaaaaggtaaattttgcttctgaatccagatttcttttggatttg
gtggaaaagctcaaagcaggggactacagttatttttcatcaaatgtgccttaccctaaa
gcagagcctagtagcactggaatgaataatactatagttgggaatattggaattaggcaa
ccgacaccaccgatggtgaactacactgggaacagtaacagtcctggcaaagtatttggt
gcatcatcacatcacgttggtcagtatggaaaccagtataatagttctatggctgctgca
actggcactcctggtccatatctactctgcaacagttgtgggggtactggtcatagctcc
acaaattgcccaagtatcatgaatggtcctggacagtccttgggaggacagggctatgcc
aacagagtttcttcagggccgggtgttggcggcagctctagtgaatgcttcaaatgccat
caaacggggcattgggcaagagaatgtccagggccgagcactgttcctccagcttatgga
agcagtgggagatatgggaatgttccaaagcaacaacttggtggcttttga
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