Corylus avellana (European hazelnut): 132174306
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Entry
132174306 CDS
T09426
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132174306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132174306
03012 Translation factors [BR:
cave03012
]
132174306
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132174306
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
132174306
Translation factors [BR:
cave03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
132174306
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
Motif
Other DBs
NCBI-GeneID:
132174306
NCBI-ProteinID:
XP_059441968
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All DBs
Position
ca1:complement(49878213..49884815)
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AA seq
571 aa
AA seq
DB search
MEEQPDVDRSGFEKTKSRNTSLGAAEADGWQDIDIDSHYKNYSTSTRKSLEAWSGSQLDL
GLVEATIEYICRHEGDGAILVFLTGWDDISKLLDKVKGNNFLGNPSKFLVLPLHGSMPTI
NQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVIDSGKAKETSYDALNKLACLLPSWI
SKASAHQRRGRAGRVQPGICYRLYPKMIHDAMLQYQLPEILRTPLQELCLNIKSLQLGTI
GSFLAKALQPPDSLAVQNAIELLKTIGALDDMEELTPLGRHLCTLPLDPNIGKMLLMGSI
FQCLNPALTIATALAHRDPFVLPISRKEEADAAKRSFAGDSCSDHIALLKAFEGWKDAKR
NGRERAFCWDSFLSPVTLQLMDDMRMQFLDLLSDIGFVDKSRGANAYNQYSHDLEMVCAI
LCAGLYPNVVQCKRSGKRTQFYTKEVGKVDIHPASVNAGVHLFPLPYMVYSEKVKTTGIY
VRDSTNISDYALLLFGGNLIPSKSGEGIEMLGGYLHFSASKSVLELIRKLRGELDRLLNR
KIEEPGLDISVEGKGVVAAVVELLHNHDARY
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggaggagcaacctgatgttgatagatcgggttttgaaaaaaccaaatctagaaacacc
agtttgggggctgcggaggctgatggatggcaggatattgatattgattctcactacaaa
aattatagtacatctacgagaaagtctcttgaagcttggtctggttcacaacttgatttg
ggtctggtggaggcgacaattgaatatatatgtcgccatgaaggtgatggagctattctt
gtattccttacaggttgggatgacatttctaagctacttgacaaagttaaaggaaacaac
ttccttggcaatcccagcaagtttctggtccttcccctacatggttcaatgcccaccatc
aatcaacgtgagatatttgatcgtcctccccctaacaagaggaaaattgtgctggcaaca
aatattgcagagagtagtatcactatagatgatgttgtgtatgtcatagacagtggaaag
gcaaaggaaactagttatgatgccctgaacaaactggcttgtctattaccatcgtggatt
tctaaggcttccgcacatcagagacgaggtcgtgctggccgtgtgcaacctggaatttgt
tatagactatatccaaaaatgatccacgatgcaatgcttcagtatcagttacctgagatt
ctcagaacacctttgcaagagctatgcctgaatatcaaaagtttgcagcttggaactatt
ggatcatttttggccaaagcacttcaacccccagattctcttgccgttcaaaatgcaatt
gaacttcttaaaacaattggagctttagatgatatggaggagcttactccccttggtcgc
catctttgcactctaccattggacccaaatattgggaagatgcttcttatggggtctatc
tttcaatgcctcaatcctgccttaacaattgccacagcccttgcacatcgtgaccctttt
gtcctaccaataagtaggaaagaggaagctgatgcagcaaaaagatcctttgctggtgat
tcttgcagtgaccacatagcacttctcaaagcctttgaaggatggaaggatgcaaaacga
aatggaagggaaagagcattctgttgggatagctttttgtccccagtaaccttgcagttg
atggacgatatgagaatgcaatttctagatctattatcagacattggctttgtagacaaa
tcaaggggtgctaatgcgtacaaccaatacagccatgatttggagatggtctgtgcaatc
ctttgtgctggactctacccaaatgttgtgcagtgcaaaagaagtggaaagcgaacacaa
ttctacactaaagaggttgggaaagttgacatccatcctgcttctgtcaatgcaggggtt
catctcttccctctgccgtacatggtttacagtgaaaaggtgaaaacaactggcatctac
gtccgagactctacaaatatatcagactacgctctacttctatttggtggtaatctcatc
cctagcaaatccggggagggcattgagatgcttggtggttaccttcatttctctgcatca
aagagcgttttagagctaatacggaaattgcgtggggaacttgataggcttctaaatagg
aagattgaggaaccggggttggacatttctgtggagggaaaaggagtggttgctgctgtg
gttgagttattgcacaatcatgatgcacgttactaa
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