Corylus avellana (European hazelnut): 132174763
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Entry
132174763 CDS
T09426
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03013
Nucleocytoplasmic transport
cave03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132174763
09122 Translation
03013 Nucleocytoplasmic transport
132174763
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132174763
03041 Spliceosome [BR:
cave03041
]
132174763
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
132174763
Spliceosome [BR:
cave03041
]
Complex C
Other components
EJC/TREX
132174763
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132174763
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
132174763
NCBI-ProteinID:
XP_059442414
LinkDB
All DBs
Position
ca3:14688548..14738257
Genome browser
AA seq
1885 aa
AA seq
DB search
MSLPPVQCICVTEDLLREWRNGNSSFKVTDRVPMLRFLYELCWTMVRGDLPFQKCKAALD
SVEFTGSVSDEELASGFADIVTQMAQDLAMPGEYRSRLTKLAKWLVESALVPLRLFQERS
EEEFLWEAEMIKIKAQELKNKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRDSEAS
AQNVSAATIGIIKSLIGHFDLDPNRAFDIVLECFELQPDNKIFLELIPIFPRSHASQILG
FKFQYYQRMEVNSPVPFGLYKLTALLVKEEFIDLDSIYAHLLPRDDEAFDHYNAFCAKRL
DEANKIGKINLAATGKDLMDDEKQGDVTIDLFAALDMETEAVAERSPELENNQTLGLLTG
FLSVDDWYHAHILFDRLSPLNPVEHIQICNSLFRLIEKSISSAYGTVRQANLQSFGPSSG
ASISIMDTANSSVHGSFVDLPSELFQMLACAGPYLYLDTLLLQKVCRVLRGYYLSALELV
GNGDEALNPESILGGNRLPRLHLKEARSRIEEALGTCLLPSLQLIPANPAVGQEIWEVMS
LLPYEVRYRLYGEWEKDDERIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHA
NPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDVLEYVVIERLAQGGRDKLKEDGLN
LSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQYTE
NLTEEQLDAMAGGETLRYQATSFGVTRNNKALIKSTNRLRDSLLSKDEPKLAVPLLLLIA
QHRSVVVINADAPYIKMVCEQFDRCHGTLLQFVEFLCSAVTPALAYAQLIPSLDDLVHLY
HLDPEVAFLIYRPVMRLFKCRGTSDVFWPLDDSDATNIASTNLASEPTEYSGNVVLDLDS
PRKPIMWSDLLDTVRTMLPSKAWNSLSPDLYATFWGLTLYDLYVPRNRYESEITKQHAAL
KALEELSDNSSSAIAKRKKDKERIQESLDRLTTELHKHEENVASVRKRLSREKDKWWSSC
PDTSKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQP
MICCCTEYEAGRLGRFLCETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQ
FVRVHWKWSQRITRLLIQCLESAEYMEIRNALIMLTKISSVFPVTRKTGINLEKRVAKIK
SDEREDLKVLATGVAAALAARKPSWVTDEEFGNGYLDNKPALPPSSKSSAGNSAPVQSSS
SKVSQSEAAGGKTVATTNLYSDSGNSVKEQILKTKPADGRSERTESLAIAKSDPGSLKLK
VGNASDAQSSLPSAAVQSGTSRSIENPKQVDESSRTLDENMAKLVPKNSTEAELRALAKR
SVSAASITKTPKQDLAKDDSRSGKAVARTSGSSTGDKDLSTHASEGRQVGATNSTSAVNA
NGNTVSASGKGSTPSARTSSDTHGNESKAESGAAKASDIRISAVKDDGAEVSDVPRPPSR
VVHSPRHDNSVIASKSSDKLQKRGSPSEEPDRLSKRRKGDSETRDLEGDVRLSDRERSVD
HGTDELYRPTDKPLDRSKDKGNERYDRDYRDRVDRSDKSRSDDIFSEKSRDRSIERYGTE
RTVERVQERGSDRSFDRVPDKGKEDRNKDDRSKLRYNDTSAEKSHNDDRFHNQGLPPPPP
LPPNVVPQSVNTGRRDEDADRRFGGTRHSQRLSPRHEEKERRRSEENSLSSQDDAKRRRD
DDFRERKREEREALSMKAEEREREREREREKASVLKDDMDASAASKRRKLKREHMPSGEA
GEYSPVAPPPPPLSIGVSQSYEGRDRGDRKGAMIQRAGYLDEPSLRIHGKEVASKMTRRE
SDPIYDREWDDEKRQRVEQKRRHRK
NT seq
5658 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctccctcctgtacagtgcatatgcgtcacagaggaccttcttcgcgaatggagg
aacggaaactctagcttcaaggtcaccgaccgcgtccccatgcttcgcttcctctacgag
ctctgctggaccatggttcgcggcgacttgccgtttcagaagtgcaaagcggcgttggac
tcagtggagttcacgggtagtgtgtcggacgaagagttggcttcgggtttcgcggatatt
gtcacccaaatggctcaagatcttgcaatgccaggagagtatcgttctcgtctcacaaaa
ttggcaaaatggctggtggaatctgcattggttcctttgaggcttttccaggagcgttct
gaggaagaatttctatgggaggctgaaatgatcaagataaaagctcaggagttgaagaac
aaagaggtcagagtaaatactcgtcttctttatcagcaaacaaaatttaaccttctgcga
gaagaaagtgagggctatgccaagctggttacccttctttgccgagactctgaagcttca
gctcaaaatgtatcagcagcaacaataggcattattaagtcattaattggacattttgat
ctggatcctaatcgtgcgtttgatatcgttttggagtgttttgaacttcagccggataac
aaaatctttctagaactgattccaatttttccgaggtctcatgcttcacagattcttggt
ttcaaatttcaatattatcagcgaatggaagtaaatagtcctgtaccgtttgggctgtat
aagcttacagctttactggtgaaggaagagtttattgatcttgatagtatatatgcacat
ttacttcccagggatgatgaggcatttgaccattataatgctttttgtgccaagcgactt
gatgaggctaacaaaattggaaagataaatcttgcggctactgggaaagatttaatggat
gatgagaaacaaggagacgtgacaatagatctttttgctgctttagacatggaaactgag
gcagttgctgaacgatctccagagcttgaaaataatcaaacattgggcttacttactgga
ttcctttctgtggatgattggtaccatgcgcatatactatttgatcgtctctcaccactc
aatccagtggaacacattcaaatctgtaacagtttgtttaggcttatcgaaaaatcgatc
tcttctgcctatggcactgtacgtcaagcaaatttgcaaagctttgggccttcttcagga
gccagcatcagtatcatggatacagcaaattcatcagttcatgggtcttttgttgatctt
cccagtgagctatttcagatgctagcttgtgctggaccttatctttaccttgatacttta
ttgcttcagaaggtatgcagagtattaagaggctactacttgtctgcattagagcttgta
ggtaatggtgatgaagcattgaatcctgaatctattcttggtgggaatcgacttccacgt
ctgcacctgaaggaagctaggtcaaggatagaggaagccttaggaacatgtttacttcct
tctttgcagttgatacctgcaaatcctgcagttggccaggagatctgggaagttatgagt
ctccttccatacgaggtgcgttatcgtttatatggtgaatgggaaaaagatgatgagcgg
attcctatggttttggctgcacggcaaacagccaagttggacactcgaagaattttgaaa
agacttgcaaaggaaaatctaaagcagttgggtcggatggttgcaaaactagctcatgcc
aatccaatgactgtacttcgaacaatagttcaccagattgaggcatacagggatatgatc
acccctgtagtagatgcattcaagtatttaacacagctcgagtatgatgttttggaatat
gttgtgatcgagcgtttagcacaaggtgggcgtgataagctaaaagaggacggcctaaat
ttgtcagattggcttcagtcgttggcttcattttggggtcacttgtgtaagaagtaccca
tcaatggaattgaggggtcttttccagtatcttgtgaaccagttaaaaaaggggcaggga
attgagcttgttctcttgcaggagcttattcaacaaatggcaaatgtccagtacacagag
aacctgactgaggaacagctggatgccatggcaggtggtgagactctccggtatcaggca
acttcttttggagtaacacgaaataacaaggccttgatcaagtcaactaacaggctaagg
gactcgttgctttcaaaagatgaaccaaagttggcagttcctcttttgttactcattgct
caacatcgttctgtggtcgtcataaatgcagatgccccttatataaagatggtttgcgag
cagtttgatagatgccatggtactcttcttcaatttgtggaattcctttgcagtgcagtg
acaccagcgttggcttacgcccagttgattccctcgcttgatgatcttgtccatctttac
caccttgatcctgaggttgcttttttgatatatcgccctgtaatgaggctcttcaagtgt
cgggggacttctgatgtcttctggcctttagatgacagtgatgctacaaatattgcttcc
acaaacttagcgtctgaacctactgaatattctggaaatgtggttttggatcttgactct
ccaaggaagcctataatgtggtctgatcttcttgatactgttagaaccatgttgccttca
aaagcctggaatagtctgtctcctgatctctatgctacattttgggggcttacactctat
gatctctatgttcctagaaatcgttacgagtctgaaattaccaagcagcatgctgctctt
aaggctctggaagagctatctgataactcaagttcagcaatcgccaaaaggaagaaagac
aaagaaagaattcaagaatctctagatcgcttgactactgaactccataagcatgaagaa
aatgttgcatctgttcgtaaacggctttctcgtgaaaaagacaagtggtggagttcctgc
cctgatacttcgaagatcaacatggagtttcttcagcgttgtatttttcctcgctgtact
ttcagtatgccagacgctgtttattgtgccatgtttgtgcacactcttcattccctcgga
acaccattttttaacacagtgaaccacattgatgttctgatatgtaagaccttacaacct
atgatatgctgctgcactgaatatgaagcgggtagacttggaaggtttttatgtgagaca
ctaaagattgcttattattggaagagtgatgaatctatttatgagcgtgagtgtggaaat
atgccaggctttgctgtgtattatagatatccaaacagccagcgagttacatatggccag
ttcgttagggtgcattggaaatggagtcaaaggataacaaggctattaattcaatgcttg
gaatctgctgagtacatggaaattcgaaatgctcttataatgttgacaaagatttctagt
gttttccctgttactcgaaagactggtataaatcttgaaaagcgggtagctaagatcaaa
agtgatgaaagagaggatctcaaggtgttggcaacaggtgtcgctgcagctttggctgct
agaaagccttcctgggttacggatgaagaatttggcaacggctatcttgataataagcct
gcgctaccgccttcttcaaagtcttcagctggtaattcagcacctgtgcaaagtagttct
tccaaagtttctcaaagtgaagctgctgggggaaaaacagttgccacaacaaacctatat
tccgattctgggaattctgtgaaagaacagatattaaaaacaaaaccagcagatgggaga
tcggaaagaactgaaagtcttgcaattgcaaagtctgatcctggaagtctaaaactaaaa
gttggtaatgcgtctgatgcccaatcatccttaccctcagccgctgtacaatctggaaca
tcaagatcaatagagaatccaaagcaggtggatgaatcctcaagaacattggatgaaaac
atggcaaaacttgttccaaagaactctacagaagctgagttaagagcgttggcaaaaagg
tcagtgtctgctgcatcaattactaagactccaaaacaagatctcgcaaaagatgatagt
aggtctggaaaagctgttgccaggacttctggctcttctactggtgacaaggatctttca
actcatgcatcagagggcaggcaggttggagctactaattctacctctgcagtcaatgca
aatggtaacacagtttcagcttcaggtaaaggttcaactccatctgctagaacatcatca
gatactcacggtaatgaatcaaaggctgaaagtggagctgccaaggcttcagatataagg
atttctgctgtaaaggatgatggtgctgaagtttctgatgtaccaaggccgccttctcgt
gttgttcattctcctaggcatgataattctgtaattgcctccaagtctagcgataagctg
caaaagagaggcagtccttctgaagaacctgatagactaagtaaacgccggaaaggggat
tctgaaacaagagatttagagggtgatgttcgattgtctgatagagagaggtctgtggat
catggaactgatgaactctataggcccacggataagcccttggatagatcaaaagataag
ggcaatgagagatatgacagggactatagggatagagtagatcgttctgataagtcccgc
agtgatgacattttctctgaaaaatctagggataggtcaatcgaaagatacggaacagag
cgtacagttgagagagttcaagagagaggttctgataggagttttgatagagtccctgac
aaaggtaaagaggataggaacaaagatgacagaagtaaattaaggtacaatgatacatct
gcagaaaaatctcataatgacgatcggtttcataatcaaggcttgcctccacctccaccg
ttaccgcctaatgtggtcccccaatctgtcaatactggtagaagagatgaagatgctgat
agaaggtttggaggcacccgacattctcaaaggctatctccaagacatgaagagaaagaa
cggagacgatctgaagagaattccttatcttcacaggatgatgcaaaacgtagaagagat
gatgatttccgagagagaaagcgagaggaaagagaggcactgtcaatgaaggcagaggag
agggaaagagaaagggaaagagagagggagaaagcaagcgttttaaaagatgatatggat
gcaagtgcagcttctaagaggcggaaacttaaaagggagcatatgccatcaggggaagct
ggtgagtattcacctgtggctccgccacctcctccccttagtattggtgtgtcacaatcg
tacgaaggaagagacaggggagaccggaagggagcaatgattcagcgtgcaggttacttg
gacgaaccaagtctaaggattcatggtaaagaagttgcaagcaaaatgacccgtcgcgaa
tcagaccccatctatgatcgcgagtgggatgacgagaagaggcaaagagttgaacaaaag
cggaggcaccgaaagtga
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integrated database retrieval system
