Corylus avellana (European hazelnut): 132174788
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Entry
132174788 CDS
T09426
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03022
Basal transcription factors
cave03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132174788
09124 Replication and repair
03420 Nucleotide excision repair
132174788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cave03021
]
132174788
03400 DNA repair and recombination proteins [BR:
cave03400
]
132174788
Transcription machinery [BR:
cave03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
132174788
DNA repair and recombination proteins [BR:
cave03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
132174788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
RasGEF
GRAM
Motif
Other DBs
NCBI-GeneID:
132174788
NCBI-ProteinID:
XP_059442448
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All DBs
Position
ca3:39366135..39375312
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AA seq
602 aa
AA seq
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MATGHVIKRAKYKTTAKGSGTPGVLKMTENRIAFKPNDPTSAAKIDVEFRSIKGHKNTKE
GSNNPPLLNLSLDQGGSYIFEFETFSDLHVCREFVANALARSGEAAKVKSREAVIATSDR
SAVTYSDEQLSTAEMELRIKLLRENSELQKLHKQFVLGNILTESEFWATRKKLLDGDSGR
KSKQLVGFKSSMILDTRPQTDGRTNKVTFNLTPEIKYQIFALKPAVQQAFLNLVPSKITE
RDFWTKYFRAEYLHSKKNAEAAAEAAEDEELAIFLKDDDILASEARRKIQRVDPTLDMEA
DQGDDYMHLPDHGIFRDGSKDTTESQHEQYKRTFLQDLNRQGEVVLEGRTIDVELDDPMS
VAEALARSRRESDGNTKEERIDRISRMTEMEDLQAPYDHPFAPLCIKDPRDYFDSQQVNA
LKISDDTRAGAEQLRCSLSTEEAYSFLRGSISEIKATGLCAPIVKPEVALTVLNGLTQNI
SSTKYQLGKNVQESILDRMPLTTKEELLHHWISIQELLRHFWSSYPITTSYLYAKVSRLK
DAMSKIYPQLEELKDSVPSDLRHQVFLLVRPMHQALDAAFQHYESDLQKRSAKSGEKPNG
YI
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggggcatgtgatcaagcgggccaagtacaagaccaccgccaaaggctctggg
actcctggtgtattgaagatgactgagaacaggattgcattcaagcctaatgatcccact
tcagccgcaaagattgatgtagagtttagatcaataaaaggacataaaaacactaaggag
ggatctaacaatccaccattgcttaatctctcccttgatcagggcgggagttacattttt
gagttcgaaactttctcagatcttcatgtttgccgagagtttgttgcaaatgctcttgca
agatctggagaggctgcgaaagtgaagtccagagaggctgtgatagccacttctgataga
tctgcggttacttattctgatgaacaactcagcacagcagaaatggaacttcgaataaag
ctattgcgagagaatagtgagttgcagaaacttcataagcaatttgtgcttggtaatatc
ttgacagaatctgagttctgggctacaaggaagaagctgctggatggagacagcggccga
aagtcaaagcaactggtcggttttaaaagttcaatgattctagacacaagaccccagact
gatggccggacaaacaaggttacattcaatttgacacccgagatcaaatatcagattttt
gctctgaaaccagctgttcaacaggcatttcttaatcttgttcctagtaagatcacagaa
agggacttctggacaaaatattttagagctgaatatctccatagtaaaaaaaatgctgaa
gcagcagcagaggctgctgaagacgaggagctagccatttttctgaaggatgatgacata
ttggcaagtgaagctcggcgaaagattcaacgggttgatccaactctagacatggaagcg
gaccaaggggatgattacatgcatctcccagatcacgggatttttcgtgatggtagcaag
gatacaactgaatcacagcatgagcaatacaagagaactttcttacaagaccttaaccgg
caaggcgaggttgttcttgaaggaagaactatagatgtagagttggacgatccaatgtcc
gtagcagaagcacttgcacgttcaagacgggaatctgatgggaataccaaggaggagaga
attgataggatttctcggatgactgagatggaggaccttcaggcaccttatgatcatcct
tttgctccactttgtatcaaggatcctcgtgattactttgattctcaacaagttaatgca
cttaaaatttctgatgacacacgagctggagcagaacaattgagatgtagcctgagcact
gaggaagcatatagctttttgaggggttcaatatctgagataaaggctacaggattgtgt
gctcccattgtcaaacctgaggttgctcttacggtccttaatggattgacccagaatatc
tcgagtactaaatatcagctgggaaagaatgttcaagagagtatactggacaggatgcct
ctcacaactaaggaggaactgctacatcattggatatcaattcaagaattactaaggcac
ttttggtcctcatatccaatcactacatcgtatctttatgccaaggtgagcagattgaag
gatgccatgtcaaaaatatatccacagctggaggaattaaaggactccgtgccctcagac
ctccgccaccaggttttcctccttgttcgtcctatgcatcaggctctagatgctgctttt
caacattacgagtcagatttgcagaagagatcagcaaagagcggggagaaaccaaacgga
tacatctag
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