KEGG   Corylus avellana (European hazelnut): 132175092
Entry
132175092         CDS       T09426                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
cave  Corylus avellana (European hazelnut)
Pathway
cave03030  DNA replication
cave03410  Base excision repair
cave03420  Nucleotide excision repair
cave03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cave00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    132175092
   03410 Base excision repair
    132175092
   03420 Nucleotide excision repair
    132175092
   03430 Mismatch repair
    132175092
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cave03032]
    132175092
   03036 Chromosome and associated proteins [BR:cave03036]
    132175092
   03400 DNA repair and recombination proteins [BR:cave03400]
    132175092
DNA replication proteins [BR:cave03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    132175092
  DNA Replication Termination Factors
   ELG1-RFC complex
    132175092
Chromosome and associated proteins [BR:cave03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    132175092
DNA repair and recombination proteins [BR:cave03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     132175092
  Check point factors
   HRAD17(Rad24)-RFC complex
    132175092
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 Rad17 AAA_22 nSTAND_NTPase5 Mg_chelatase AAA_lid_RFC1 AAA_16 Viral_helicase1 RCF1-5-like_lid RuvB_N nSTAND3 AAA_11 AAA_5 AAA_assoc_2 AAA_28 AAA_19 DNAX_ATPase_lid MeaB AAA_25 RNA_helicase ABC_tran AAA_30 bpMoxR IstB_IS21 NTPase_1 AAA_18 AAA_3 AAA_24 AAA_7 DNA_pol3_gamma3 NPHP3_N SLFN-g3_helicase T2SSE AAA_29 DO-GTPase1
Other DBs
NCBI-GeneID: 132175092
NCBI-ProteinID: XP_059442894
UniProt: A0ACM5KIS6
LinkDB
Position
ca3:28299545..28304182
AA seq 334 aa
MAASSSSGSTSHGYDMPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNVPNLILSGPPGT
GKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVIL
DEADSMTSGAQQALRRTMEIFSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILG
RLMVVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHP
LHVKNMVRHVLEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKET
GFAHMRICDGVGSYLQLCGLLAKLSVVRETAKAA
NT seq 1005 nt   +upstreamnt  +downstreamnt
atggctgcctcttcttcgtccggcagcaccagccatggctacgacatgccgtgggtggag
aagtatcggcccaacaaggtcgccgatatcgtaggcaacgaggacgccgtgtccaggctc
caagtcatagctcgcgacggcaacgtgcccaacctcatcttatccggtcctcctggaact
ggtaaaaccacgagtatcctggcgcttgcgcatgagcttctgggacctaattataaggag
gctgttttggagctaaatgcatcagatgacaggggaattgatgttgtgaggaacaagatt
aagatgtttgctcaaaagaaagtaacactgccccctgggcgccacaagatagtaatttta
gatgaagctgacagcatgacatctggagcacagcaagctttgaggaggacaatggaaata
ttttcaaactccactcgttttgctcttgcttgcaatacgtcttctaaaattattgagccc
attcaaagtagatgtgctcttgttcgattttcaagattgtctgatcaagagatacttggt
cgtctgatggtggtggtcgaagctgaaaaggttccttacgttccagaaggtcttgaagcc
ataattttcactgctgatggtgacatgaggcaggcattgaacaacttgcaagctacatat
agcgggttccgttttgtcaaccaagaaaatgttttcaaggtctgtgatcagcctcatccg
ttgcatgtaaagaacatggtgcgtcatgtactggaagggaaatttgatgatgcttgttct
ggtctcaagcagctctatgatttgggctattctcctaccgacataatcacgaccctcttc
cgtatcattaaaaattatgacatggctgagtatctgaaactggagttcatgaaggaaact
ggatttgcccatatgagaatctgtgatggagttggttcatatcttcagctctgtggtctt
ttggctaagctttctgtggttcgtgaaacagctaaagcagcatag

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