Corylus avellana (European hazelnut): 132175262
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Entry
132175262 CDS
T09426
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03030
DNA replication
cave03420
Nucleotide excision repair
cave03430
Mismatch repair
cave03440
Homologous recombination
cave03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
132175262
03420 Nucleotide excision repair
132175262
03430 Mismatch repair
132175262
03440 Homologous recombination
132175262
03460 Fanconi anemia pathway
132175262
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cave03000
]
132175262
03032 DNA replication proteins [BR:
cave03032
]
132175262
03400 DNA repair and recombination proteins [BR:
cave03400
]
132175262
Transcription factors [BR:
cave03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
132175262
DNA replication proteins [BR:
cave03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
132175262
DNA repair and recombination proteins [BR:
cave03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
132175262
MMR (mismatch excision repair)
132175262
DSBR (double strand breaks repair)
HR (homologous recombination)
132175262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
132175262
NCBI-ProteinID:
XP_059443124
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All DBs
Position
ca3:6529778..6533176
Genome browser
AA seq
629 aa
AA seq
DB search
MAKSVTADAISTILANPSPESFSDVPEIVVQVVDLKATGTAGNRIMFSASDGKRKLRAIL
PASMSSEVMSGKIQNLGLIRILDYTLNDIPNKPDKYLIVTKCEVVSPALESEIISEVKSE
GTTGIILKPKQETESKSEVKSQATGIVLKPKQEIVAKSAAQIVHEQRENMAPAARMSMTR
RVFPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNIELTDEDGTQIQATMFNEA
AKKFFDRFQLGKVYYISKGSLKLANKQFKTVKNDYEMTLNENSVVEEAGNEEIFVPETKF
NFVQIDELGPYVNAKELVDIIGVVQNVSPTMSIRRKSDNESIPKRDIIIADETKKTVVVS
LWNELATNMGQELLDTASSSPIVAIKSLKVGDFQGISLSTISRSTVVVNPDIPEAKKLRS
WYDAEGKDSSMASVSAGMSPSTKSGSRSMYSDRVSLSHITKNPSLGDGKPVFFSIRGYIS
FIKPDQTMWYRACKTCNKKVTEALGSGYWCEGCQKNEDECNLRYIMVVRVSDASDEGYLS
AFNEEAEKIVGCSADELDKLKSQIGEENSFQTKLKEATWNPHLFRISVAQTEYNSEKRQR
ITVRAVAPVDFAAESRFLLEEISKMRVSK
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaatcggtgaccgcagatgcgatctcgaccatactggcgaacccgtcgccggaa
tctttttcggatgtcccggagatcgtcgtccaagtcgtcgatctcaaggccaccggcacc
gccggtaaccgtattatgttttcagccagtgatggaaagaggaagctaagagcaattctc
ccagcaagtatgagttctgaggtgatgtcaggaaagattcagaacctaggtctcattcgg
attcttgattatactctcaatgacattcctaacaagcctgacaaatatctaatcgtcaca
aagtgcgaggtggtttctcctgcgcttgaatctgagatcatatccgaggtaaagagtgag
ggaacaactggcattatattgaaaccaaagcaagaaactgagagcaagagcgaggtgaaa
agtcaagcaactggcattgttttgaagccgaagcaggagatagttgccaaatcagctgct
cagatcgtacatgaacagcgtgaaaacatggccccagctgcacggatgtccatgacgcga
agagtttttcctctggtttccttgaacccttatcaaggcaattggaccataaaggttcgt
gtcacaagcaaaggaaacatgcgcacctataagaacgctagaggagaaggctgcgtcttc
aacatagagttaacagatgaagatggcacccaaatacaagcaacaatgttcaatgaagct
gcaaagaaattctttgacagatttcaactggggaaggtttattacatttcaaagggaagc
ctgaaacttgctaacaagcagtttaagacagtgaaaaatgactatgaaatgaccctgaac
gagaattctgtggtagaagaggccggcaatgaagagatctttgttcccgaaacaaaattc
aatttcgtccagattgatgaattgggtccttatgtcaacgcgaaggagcttgtggacatc
attggagtagttcaaaatgtgtctcctacaatgagcatccggaggaagagcgacaatgag
agtatcccaaagcgtgatattattattgctgatgagacgaaaaagacagtcgtggtctcc
ttgtggaacgagctggcaacaaacatggggcaggagttgttggatactgcaagcagttct
cctatagttgcaattaaatctcttaaagttggggacttccaaggtatatctttgtcaaca
ataagcagaagcacagtagtagtaaatcctgatatacctgaagcaaagaagttgagatct
tggtatgatgccgagggtaaagacagttcaatggcttctgtcagtgccggcatgagccca
tcaacgaagagtggttcaagatcaatgtactctgaccgagtttctctttctcacataacc
aaaaacccatccttgggtgatggcaagcctgtatttttcagcattagaggatatatcagc
ttcatcaaacctgatcagacaatgtggtaccgtgcttgcaaaacttgcaacaaaaaagtg
acagaggctttggggtctgggtattggtgtgaagggtgccagaaaaatgaagatgagtgc
aatttaaggtatataatggtagtcagagtttctgatgcaagcgatgaagggtatttatct
gcctttaatgaggaagctgagaaaattgttgggtgctctgctgatgagcttgataagttg
aaatcacagattggagaagagaattcattccaaacaaaactgaaagaagctacatggaat
cctcatctcttccggattagcgttgcacagactgagtacaatagcgagaaaaggcaaagg
atcacagtcagggctgttgccccagttgattttgctgctgaatcaagatttttgctggaa
gagatatcaaagatgagagtttctaaatag
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