Corylus avellana (European hazelnut): 132175811
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Entry
132175811 CDS
T09426
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132175811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132175811
03012 Translation factors [BR:
cave03012
]
132175811
Enzymes [BR:
cave01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132175811
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
132175811
Translation factors [BR:
cave03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
132175811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
nSTAND3
NACHT
Dicer_dimer
ATPase
AAA_19
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
132175811
NCBI-ProteinID:
XP_059443855
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All DBs
Position
ca1:7681207..7703231
Genome browser
AA seq
1194 aa
AA seq
DB search
MLSPSLLHTPPQFPSTSHPKTVKPSHSPPSLLAMKDRPPSSYGAIYVPPHHRLRSVITSP
SYTSAALIDSKLREAQSAALNPRASPLPYLQTQQEQLHKANSQHDDRLSEEGSDHEFESL
SQWGDSPSNNVVEWKRKFTMLLRDKEKQELISREKKDRHDFEQISALASRMGLYSQLYSK
VVVFSKVPLPNYRFDLDDRRPQREVALPLGLLRRVDSYFGEYLSQKAKARENFSDVSFSR
TSSSCSIATDEGLFEQPEPLAASKTVLEKILRRRSLQLRDQQQAWQESPEGRKMLEFRMR
LPAYKEKDALLTAIARNQVVIISGETGCGKTTQIPQFILESEIEYVHGAVCNIICTQPRR
ISAMSVSERVASERGEKLGEHVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLKGVT
HVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFGGAQIIHIPGF
TYPVQTHFLENIVEMTGYRLTPYNQIDDYGQEKMWKMSKHAPRKRKSQIASVVEDALRAA
DFKEYSPQTRESLSCWNPDCIGFNLIEFLLCKICENERPGAILVFMTGWDDISSLKDKLQ
AHPFLGDPSRVLLLACHGSMASSEQRLIFDEPDDGVRKLVLATNIAETSITINDVVFVID
CGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVRPGECYHLYPRCVYDAFAEYQL
PEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYLKIIGALDENENLTV
LGRYLTMLPMEPKLGKMLILGVIFNCLDPVLTIVAGLSVRDPFLTPFDKKDLAEAAKSQF
SRDYSDHFALVRAYEGWKDAERDIAGYEYCWRNFLSVQSMKAIDSLRKEFFSLLKDTGLV
DGNTTSYNAWSHDEHLVRAVICNGLYPGICSVVHNEKSFSLKTMEDGQVLLYSNSVNARE
SKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGSISRGDTDGHLKMLGGYLEFFMN
PSLADMYQSLRKELDELIQKKLLYPRMDIHTHHELLSTVRLLVSEDQCDGRFIFGRQVLK
PSKTSDMATKPSLVSRIESGPGGDNSKSQLQTLITRAGYVAPIYKTKQLKNNQFRATVEF
NGMQIMGQPCNNKKSAEKDAAAEALQWLMGGNQAGHDCINHMSILLKKIKKDHS
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgctctctccctctctcctccacactcctccacaattcccttccacttcgcaccccaaa
actgttaaaccctcacactctcctccttcactcctcgcaatgaaggaccggcctccgtcc
tcttacggcgccatttacgtccctccccaccaccgcctgcgctccgtcatcacatccccc
agttacacctccgccgctctcatagactccaagctccgcgaagctcaaagcgccgctcta
aaccctagagccagtccactgccttacttgcaaacccagcaagaacagctccacaaggca
aattcgcagcacgatgatcggctctccgaggaaggctccgatcatgagttcgagtcgttg
tcgcaatggggtgattccccctctaataacgttgttgagtggaaacggaagtttacaatg
cttttacgcgacaaggagaagcaagagttgatctcaagggaaaaaaaggatagacatgat
tttgagcaaatatcagctttggcaagcagaatggggctatatagccaactgtattcaaaa
gttgttgtctttagtaaggtcccactgccgaactacagattcgatctggatgacagacgt
ccacagagggaggtggcactgcctcttgggttgctaagaagggttgattcttattttgga
gaatacctctctcaaaaggctaaggctagggaaaacttttcagatgtatcattttcgaga
acaagcagcagctgtagtattgccactgatgaagggctttttgagcaacctgagccactg
gcagctagtaagactgttttggaaaaaattcttaggcgaagaagtttgcaactgcgtgat
cagcaacaagcttggcaggaatctcctgaaggtagaaaaatgctagaatttcgtatgagg
ctcccagcttataaagaaaaggatgcattgctgacagctattgcacgaaatcaggttgtt
attatctcaggtgaaactggctgtggcaagaccactcaaattccccaattcatcttagaa
tcagagatagaatatgttcatggagctgtttgtaacattatctgtacccagccaagacga
atatctgctatgtctgtttctgaaagggttgcttcggagagaggagagaaattgggtgaa
cacgttggatataaagttcggttggaaggtatgaaagggagggatacccgccttctcttt
tgcactactggcatcttgttgagaagattgctagttgatagaaacttgaaaggtgtaact
catgttattgtggatgagattcatgagcgtggaatgaatgaagattttctgcttatcgtc
ctaaaagatctccttcctcggcggccagaacttaggctaattctgatgagtgcaaccctt
gacgcagagcttttctcatcctactttggtggggctcagataattcacatcccgggtttt
acatacccggttcagactcatttcctggagaatattgtggaaatgacgggttacagattg
accccgtacaaccagattgatgattatggtcaagagaagatgtggaaaatgagcaaacat
gcaccaagaaagaggaagagccaaattgcttccgttgttgaggatgctctcagagcagcc
gattttaaggagtatagcccccagactcgtgaatctttgtcatgttggaatcctgattgt
attggttttaatctcatagagtttcttttatgcaaaatatgtgaaaatgagaggcctggt
gctatcctagtttttatgactggctgggatgacataagttctctgaaagataagttgcaa
gcacatcctttcttaggagatccaagccgtgttttgttgctagcatgccatgggtctatg
gccagttcagagcagaggttaatatttgatgagcctgatgatggagtgaggaaactagtg
cttgctactaatattgccgagaccagcattactattaatgatgttgtgtttgttattgac
tgtggaaaggctaaagagacatcttatgacgcattgaataacactccttgtttgcttccg
tcctggatttccaaggtttctgctcaacaaagaagaggaagagctggccgcgttagacct
ggagaatgttaccatctctatcctagatgtgtatatgacgcttttgcagagtatcaattg
ccggaaattttaaggacacctttgcagtctctctgtctgcaaataaagagtttgaaactt
ggaagtatttctgagttcttatctagggctttgcagtcaccagaattactagcggttcaa
aatgctatcgagtatctaaaaattattggtgccctcgatgagaatgaaaatctgacagtc
ttgggacgctatttgactatgcttccaatggaaccaaaacttggaaagatgctcatcttg
ggggttatcttcaattgcctggatccagtattgactattgtcgctggcctcagtgtcaga
gatcctttcttaacaccatttgacaagaaggatcttgcagaggctgcaaaatctcagttt
tcccgggattacagtgaccactttgctcttgtccgggcctatgaaggttggaaagatgct
gaaagagatattgctggatatgaatactgctggagaaattttctttcagtgcaatcaatg
aaagctattgattctcttaggaaggagtttttctctttactcaaggatactggcttggtt
gatggcaacacaacctcctacaatgcatggagtcatgatgagcatctcgtccgagcagtt
atttgcaatgggctatatcctggaatttgctctgttgtgcacaatgaaaagtcattttca
ctgaaaactatggaagacggtcaggtgcttctatactcgaactcagtcaatgctcgggaa
tctaaaattccatatccgtggctagttttcaacgagaagataaaggtgaattctgttttc
ctccgggattcaacagctgtttctgattcagtgcttctcctatttggtgggagcatctca
agaggggataccgatggacacttgaaaatgttgggaggatatctcgaattcttcatgaat
ccttctttagcagacatgtatcaaagtttaaggaaagaacttgatgagcttattcagaaa
aaactactgtatcccagaatggacatacacacccatcatgagctcctatctaccgtgcgg
ttgctggtttcagaggaccaatgtgatggcagatttatatttggccgccaggtccttaag
ccctcaaagacatctgatatggcaacaaagccgtccttggtttcaagaattgaaagtgga
cctgggggtgataattctaagagtcagctccagacattgatcactagggcaggatatgtt
gcacccatttacaagactaagcaactgaagaacaaccagttccgggccactgtggagttt
aatggaatgcaaattatgggtcagccttgcaacaacaagaagagcgcagagaaagatgct
gcagctgaggctcttcagtggcttatgggtggaaaccaagcaggccatgattgtataaat
catatgtcaatcttgctgaagaaaatcaagaaggatcatagttaa
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integrated database retrieval system
