Corylus avellana (European hazelnut): 132175930
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Entry
132175930 CDS
T09426
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132175930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cave03019
]
132175930
Messenger RNA biogenesis [BR:
cave03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
132175930
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
EIF3I
WDR55
Beta-prop_TEP1_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EIPR1
Beta-prop_EML
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Cytochrom_D1
Beta-prop_NWD2_C
Beta-prop_DCAF4
Ge1_WD40
Beta-prop_NOL10_N
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
132175930
NCBI-ProteinID:
XP_059444009
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Position
ca3:complement(6800851..6808773)
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AA seq
437 aa
AA seq
DB search
MENSVEQTLQDGKLYRHLNSLIVAHLRDNNLNQAASAVASATMTPLNVEAPPNKLLELFA
KGLAVEKDEMLRGVTSSALFDLGSSLPASYGSIPAPRAAAVDFSAVQDTKGSSKSFPKHE
TRHLSEHKNVARCARFSPDGRFVATGSADTSIKLFEVAKIKQMLLPDARDGHVRPVIRTF
YDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKMTAKRAFRVIQDTHNVRSVSFHPSG
DFLLAGTDHSIPHLYDVNTFQCYLSANVPEIGANGAINQVRYSSTGGMYVTASKDGAVRL
WDGVTANCVRSIVGAHGVAEATSANFTKDQRFVLSCGKDSTVKLWEVGTGRLVKQYLGAT
HTQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVARWPSNHIGAPRWVEHSPVEAA
FVSSGTDRSIRFWKEIL
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggagaacagcgtggagcagactctgcaagatgggaaactgtacaggcatctcaattct
cttatcgttgctcatcttcgtgacaacaatcttaatcaggctgcaagtgcagttgcttca
gcaaccatgacaccgttgaatgttgaagccccacctaataagcttctggagctgtttgct
aagggtcttgcagtggagaaagatgagatgttaagaggggttacatcatctgcattgttt
gatttgggtagttcattacctgcatcatatggctcaatccctgctcctcgcgctgctgct
gttgatttcagtgctgtgcaggatacaaaagggtcatcaaaaagttttccaaagcatgag
acacggcatctttcagagcacaagaatgttgccagatgtgcaagatttagccctgatggg
aggtttgttgccactggaagtgcagatacatcaataaagctctttgaggttgcaaaaatt
aagcaaatgctgctgccagatgcaagagatggtcatgtgcgacctgtcatacggacgttt
tatgaccatatacaaccaataaatgacttggatttccatcctcaaaatactgttctgata
tctggggccaaagatcacactataaagttctttgatttctccaaaatgactgcaaagaga
gcattcagagttatacaggatacacacaatgtgcgttctgtatcttttcatccttctgga
gattttcttttagcaggaactgatcattcaatcccacacttgtacgatgtcaataccttt
cagtgctatctatctgcaaatgtgccagaaattggtgctaatggagccataaatcaggtc
aggtattcatctacaggtggcatgtatgttacagcatctaaagatggtgctgttcggcta
tgggatggggtaactgccaattgtgtgcgctccatagttggtgcacatggagtggctgag
gcaactagtgcaaattttacaaaggatcaaaggtttgttctctcttgtgggaaggattcg
actgtgaagctttgggaagttggcaccggaagattggtcaaacagtatcttggagctaca
catacacagttgcggtgccaggctgttttcaatgacactgaagaattcgtactatccata
gatgaaccaagcaatgagattgtaatttgggatgctctgacagcagaaaaagtagcaagg
tggccttcaaatcatatcggtgcaccccgctgggttgaacactcaccggtagaggccgcc
ttcgtttcctctgggactgataggtctatccggttctggaaggaaatactctag
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