Corylus avellana (European hazelnut): 132176169
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Entry
132176169 CDS
T09426
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like isoform X1
KO
K14829
pre-rRNA-processing protein IPI3
Organism
cave
Corylus avellana (European hazelnut)
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cave03009
]
132176169
Ribosome biogenesis [BR:
cave03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
132176169
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Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_EML
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_SCAP
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_IP5PC_F
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_Vps41
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_SPT8
WDR90_beta-prop_4th
WD_LRWD1
Beta-prop_WDR75_2nd
PEP5_VPS11_N
VPS8_N
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
132176169
NCBI-ProteinID:
XP_059444284
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Position
ca3:1616283..1620592
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AA seq
487 aa
AA seq
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MGKGGDALVVCSDKSLGIGITIWDVDTGDHLLHIPTCASPSHGLLCLRKQFLVASQIHRH
GSVGGGAIFIWALNKPQLPLRSYPVEAIVPLSCTKDGIYLAGGALSGNAYLWEIASGRLL
KTWQAHDKSLNCLLFSNDDSLLISGSNDGMICVWSVISLLDMADSGSLPSLLHYSSEHRS
SVTGLLNTSGSSSSVLVSSSLDGTCKVWDFVSGRLIQTQVYPVAITAIVLDPGEQLLFCG
SVDGRIFVNRLDIGLLEDPFFVAQAQSVVLKEHNGAITALAFSESGLISASEDCTICMWD
VVNWVIIRKFNHRKGAVTNLTVIPQSSLLSVSNHQRVSNQLQVSMLDKYPQPASSSKEKI
TLPSSCCSLKEKQISLDFRSTDSLNQHISDFQLPRFSFSVLEYGQKDGTPAAMQMKVETC
IENRIWATRMTKHVMEMNKHLQSRLLDLMQCRLLWPTEIDTPSSRKRKMLKIESPLLQGE
EKPQSST
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagggtggggacgctttggtggtttgcagcgacaagagcttgggaataggcata
acaatatgggatgtggacacaggggatcatctcctccacattccaacctgcgcttcccct
tctcatgggttattatgcctgagaaagcagttccttgtagcttcccagattcacagacat
gggtctgttggtggaggagccatcttcatctgggcattgaataagcctcaactgcctctt
cggagttatccggtggaggccattgtgccgctttcttgcacaaaggatggcatatatctt
gctggaggggcactttctggaaatgcttatctttgggagattgctagcggaagattgctc
aagacgtggcaagctcatgacaaatctttgaattgcttgctgttttctaatgatgattct
cttctaatttctgggtcaaatgatggtatgatctgtgtgtggtctgtaattagtttgcta
gacatggcagattctggaagcttgccttctttgttgcattattcatcagagcatagatcc
tctgttactggtctgttaaacacatcaggcagctcaagttcagttctagtatcaagctcc
cttgatggcacatgcaaggtttgggactttgtctcaggaaggcttatacaaactcaagtt
tatccagtggcgataactgcaattgttcttgatccaggggagcagctcttgttctgtgga
agtgtggatggaagaatttttgtcaacaggcttgatattggactattagaggaccctttc
tttgttgcacaagcccaatcagttgtgctaaaagaacacaatggagccataactgcattg
gccttcagtgaatcaggcctgatatctgcatctgaggactgcaccatctgcatgtgggat
gtagtaaattgggtgatcatccggaaattcaaccatcgaaaaggggcagtaactaatctg
acagtgattccgcagtcctcactgctttctgtatcaaaccatcagagagtttcaaaccag
ctccaagtttctatgcttgacaagtaccctcagccagccagctcatccaaggaaaaaatt
actctcccttcctcatgctgttcccttaaagaaaagcagatttcccttgatttccgaagt
actgattcattgaaccagcatatatctgatttccagttgccaagattctctttctctgtc
ttggaatatgggcagaaagatggaactccagcagcaatgcaaatgaaggtggaaacttgc
atagagaatcggatttgggccacaagaatgacaaagcacgtgatggagatgaataagcat
ttgcagtcacgtttgcttgacttgatgcagtgcagattattatggcctactgagattgac
accccctcatctagaaaaagaaaaatgctgaagattgagagtccactactacagggggag
gagaaaccacaatcctcaacttaa
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