Corylus avellana (European hazelnut): 132176303
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Entry
132176303 CDS
T09426
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132176303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cave03021
]
132176303
Transcription machinery [BR:
cave03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
132176303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DUF5679
Motif
Other DBs
NCBI-GeneID:
132176303
NCBI-ProteinID:
XP_059444453
LinkDB
All DBs
Position
ca3:complement(23778273..23785686)
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AA seq
543 aa
AA seq
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MSCDLMLKSSCSGCGSTSDLYGSNCKHMTLCLTCGKTMAENRGKCYDCGATVNRLIREYN
VRASSSSDKNYFIGRFVTGLPNFSKKKTAENKWSLHKEGLQGRQLTDALREKYKNKPWLL
EDETGQSQYQGQLEGAQSATYYLLMMHGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM
KNRKKTADGYERWMMKAANNGAAAFGEVERIDDKDSVVGGGRGRRKTTGDDEEGNVSDRG
EEVEEEEAARKNRLGLNKRSGDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDEAVG
NNPEEREELVPEVPAPPEIKQDEDDEDEDNEEEGGLSKSGKELKKLLGRAGGLNDSDVED
DDDDDDMEDEIGLSPVLAPKQKDAPKEEPSEISPVKTVPSGSARGTPSTSKSAKAKRKLN
GEDAKASNGAPSKKVKTENELKPSLKEETVPASKSSVPSKGIPPSSSSSKIVSTSSAGPV
TEEEIRAVLMQKTPVTTQDLVANFKARLRSPEDKKAFADILRKISKIQRTNGSKSSHVVL
RDR
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgcgatctgatgttgaagtcgtcgtgcagtggatgtggatcgacctcggacttg
tacggaagcaattgcaagcacatgactctgtgcttgacctgtggaaaaaccatggccgag
aaccgtggcaagtgctacgactgtggcgccaccgtcaatcgcttgattcgagaatacaat
gttcgtgcaagttctagcagcgacaagaattactttattggtagatttgtgactgggttg
ccaaatttttctaagaagaagactgctgagaataaatggtctctccataaagaagggcta
caaggacgccaacttactgatgccttgcgggagaagtacaagaataaaccatggctattg
gaggatgaaacagggcaatctcagtaccaaggtcagcttgaaggtgcacaatctgctaca
tactacctactaatgatgcatgggaaggagtttgttgctattcctgctggttcttggtac
aactttaacaaggttgcacaatataaacaacttacgctggaggaagcagaagaaaagatg
aagaacaggaaaaagactgcagatggatatgaaagatggatgatgaaagctgcaaataat
ggagctgctgcatttggtgaagtggagaggattgatgacaaggatagtgttgtgggtggt
gggagagggcgtagaaaaacaactggtgatgatgaggaaggtaatgtttcagatagaggg
gaggaggttgaagaagaagaggcagcaaggaagaatagattgggacttaacaagagaagt
ggtgacgatgatgaggaaggtccgaggggtggtgatcatgatttggatgatgatgatatt
gagaagggtgatgattgggagcatgaagaaattttcactgatgatgatgaagccgttggt
aataatcctgaggaaagggaagaattggtccctgaagttcctgctcctccagaaattaag
caggatgaagatgacgaggatgaagataatgaagaggaggggggactgagcaaatctgga
aaagagttgaagaagctgcttgggcgagctggtgggcttaatgattcagatgttgaggat
gatgatgacgacgatgatatggaagatgagattggcctttctcctgtgctagctccaaag
cagaaggatgcacccaaagaggaaccttctgaaatcagccctgtcaaaacggtgccttct
ggatctgctcggggaaccccatcaacctctaagtctgcaaaggcgaagagaaaattaaat
ggcgaagatgcaaaagcatctaatggtgcaccttcaaagaaggtgaagacagaaaatgaa
ttaaaaccttctttgaaagaagaaacggtgcctgcttctaagagtagtgtgccgtcaaaa
ggcataccaccatcatcatcatcatcgaaaattgtgtcaacatcatctgctgggcctgtc
accgaagaagaaatcagggctgttttaatgcaaaagacaccagtgacgacgcaggatctt
gttgctaattttaaggctagactaagatccccggaggacaaaaaagcctttgcagacatc
ctgaggaaaatttcgaagatacagaggacgaatgggtcaaagtcaagccatgttgttttg
agggacaggtga
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