Corylus avellana (European hazelnut): 132177273
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Entry
132177273 CDS
T09426
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
cave
Corylus avellana (European hazelnut)
Pathway
cave03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cave00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132177273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cave03041
]
132177273
Spliceosome [BR:
cave03041
]
Complex A
U1 snRNP components
U1 related factors
132177273
Complex B
132177273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
132177273
NCBI-ProteinID:
XP_059445505
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All DBs
Position
ca4:4227914..4262762
Genome browser
AA seq
1044 aa
AA seq
DB search
MANNPRFSGAQPHQPPIGGSMEPPRSFLPPMSSQFRQVGPAQQSQQFNPMPSQHFYPVGR
GVPLMNVGLPPQTLQPQFSQPMQQFPPRAGQPGHATLPSQAIPLPIAQPNMHITSEKSMP
QINAQTPNNYSPSLGGPERPLSSSYTFASTSYGQPQMNFNTSTHYQSTSQMHAPNISSGR
QLSLSSESQSTASAAQRTAEQPSVPTAIVSAASIQHNSTREAPTDWIEHTSADGRRYYFN
KKTRQSSWEKPSDLMTPIERADASTNWKEYTSPDGRKYYYNKVSKESKWSIPEELKLARE
QVEKSSFLGTQQETFGTPPVSYTVPPSAVEAPSGADTLSSPAQGIPSSPVSVGPDVAVSD
LQPVLVSGSTASILIASPKDEKADGVQTLVNLVTSSAAVPESGEATVSIASTIPASMYSQ
SSMDNVDNLLAQDIHSSADGIPAKDLEGVDAVKALEEVKTDEIGEKMTDSALVAKSIDPE
PLIYANKLEAKNAFKALLESTNVGSDWTWDRAMRVIINDRRYGALKTLGERKQAFTEFLS
QRKKQEAEERRIKLKNAREEFKQMLEECTDLTSSTRWSKAVSMFENDERFKAVERDRDRR
ELFDNYLVELKNKERARAEEERKRNIMEYKQFLESCDFIKADSQWRKLQDRLEVDERCAR
LEKIDRLDIFLEYIRDLEKEEEERRKIQKEELRKVERKNRDEFRKLMEEHVTEGILTAKT
HWRDYGVKIKDLPAYLAVASNTSGSTPKELFEDVLEELEKQYHEDKTRIKEAVKLGKILV
SSTWTFEDFKGAISKDFNSPPVSDVNLKLVLDELQERVREKEEKEAKKRKRLADDLIRLL
CSMKEITASSKWEDCKPLFDGSREFSSIGEESLCREIFEQYVAQLKEQAKEHDRKRKEEK
AKKEKEREDKERRKVKQRREKEEGRERGKDEQFKKDLADSKYADEPELHACKENKRSGED
NIKKQRKRHQSSEDIVDDNEKDRSRKSHGSTSDHKKSRRHASGLESDNESKHKRHKRDRR
NGSRRYGDHEELEDGEFGEGRQSW
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggccaataatcctcgattttcgggtgcacagcctcatcagcctcctataggtggttca
atggaacctcctcgaagtttccttccacccatgtcttctcaattccgacaggtgggtcct
gcacagcagtcacagcagttcaatcctatgccttctcaacatttttatcctgttggccga
ggcgttccgctaatgaatgttggattgcctcctcaaactctgcaaccccaattttctcaa
ccaatgcagcagtttcctccacgagctggtcagccaggtcatgctacactaccatcacag
gcaattccattgccaattgctcagccaaacatgcacattacatctgaaaaatcgatgcct
cagattaatgcccaaactccaaataactattcacctagtttgggtggcccagaaagacct
ctcagttcatcatatacttttgcatcaacttcttatggtcaaccacaaatgaattttaat
acttccacccattatcagtctacatctcaaatgcatgcacccaatatttcttctgggaga
caacttagtttatcatctgaaagtcagagcactgcctctgctgcacagcgcactgctgaa
caaccatcagttcccactgccattgtgtcggcagcaagcatccagcataattccaccaga
gaggccccaacagattggatagagcatacttctgctgatggaagaagatactatttcaac
aagaaaacacgacaatctagttgggagaagccctcagatttgatgacgccaattgagagg
gctgatgcatcaactaactggaaggaatatacaagtcctgatggaaggaagtactactac
aacaaggtttcgaaggaatccaaatggtcgatccctgaggagctgaagttggctcgcgag
caagtagaaaagtcatctttcttgggaacacagcaggaaacatttgggactcctcctgtc
tcatataccgttcctccctccgcggttgaagcaccatctggggcagataccttatcttcc
ccagctcaagggataccttcaagcccagtttcagtgggacctgatgttgctgttagtgat
ctgcaacccgtgttggtttctggatcaactgcttcaattcttatagcttctcctaaagat
gaaaaggcagatggagtgcagacacttgtaaatcttgttacgagttcagcagctgtacca
gaaagtggtgaagccaccgtatccattgccagtaccattcctgcatccatgtatagtcaa
tcatccatggacaatgttgacaaccttttggctcaagatattcatagttctgctgatgga
attcctgcgaaagacttagagggagttgatgcggttaaagcgttggaggaagtcaagaca
gatgaaataggggagaaaatgactgatagtgcgttggtagcaaaatcaattgatcctgaa
cccttgatatatgccaacaagctggaggctaaaaatgcattcaaagcacttttggagtct
accaatgttgggtctgattggacctgggatcgggcgatgagagtaataattaatgacaga
aggtatggtgctctgaaaacacttggagagcggaagcaagctttcactgagttcttaagt
caaagaaaaaaacaggaagctgaggaaagacgcattaaactgaaaaacgcacgggaagaa
tttaaacaaatgttagaagagtgcacagacctgacatcatccacaagatggagcaaagca
gtgagtatgtttgagaatgatgaacgttttaaagctgtcgaacgagatagagatcgcaga
gaattgtttgataactacttggtggaactcaaaaacaaggaacgagcaagggcagaggag
gaacgcaagaggaatataatggaatacaaacaattcttggaatcttgtgattttattaag
gcagacagccaatggcgaaaacttcaagaccgcttagaagtcgatgaaagatgtgcacgt
cttgaaaaaatcgatcgcttggatatttttttggaatatatacgtgatttagagaaggaa
gaagaagagaggaggaagatacagaaggaagaattgagaaaggttgagcgtaaaaaccgt
gacgagttccgaaaattaatggaggagcatgttactgaaggcattcttacagccaaaacc
cactggcgtgattatggcgttaagattaaagatttacctgcatatttggcggttgcgtca
aacacttcaggttcaactccaaaagagttgtttgaagatgttctcgaggagctagagaaa
cagtatcatgaagataaaactcgaataaaagaagcagtgaagctgggcaagatcctggtg
tcatctacctggacgtttgaagattttaagggtgctatttcaaaggattttaattctcca
ccagtatcagatgtcaacctaaagctggtattggatgagttgcaggagcgagttagggag
aaggaagagaaagaagcaaaaaagcgtaaacgccttgcagatgacttgattcgtctactt
tgttcaatgaaggaaataactgcatcatcaaagtgggaggactgcaaaccactttttgac
ggtagtcgagagttcagttccataggagaagagagcctttgcagggagatatttgagcaa
tatgtagcacaactaaaggaacaggcaaaagaacatgaccgaaaacggaaggaggaaaag
gcaaagaaggaaaaagagagagaggataaagagaggagaaaagtcaagcagagaagggaa
aaagaggaaggacgtgaaagaggaaaagatgagcaatttaaaaaggatttagcagacagt
aaatatgctgatgaaccagaacttcatgcctgcaaagagaacaaaagatcgggagaagac
aatattaagaagcaaaggaagcggcatcaaagttctgaggatattgtagatgacaatgag
aaagatcggtctaggaaatcccatggatctaccagtgaccacaagaaatcaagacgtcat
gcatctggtcttgaatcagataatgaaagcaagcataaaagacataagagagaccgcaga
aatggttctcgcagatatggagatcatgaggaacttgaagatggggaatttggtgagggt
aggcaaagttggtag
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integrated database retrieval system
